Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021253X
         (322 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    30   0.006
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    27   0.074
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   0.91 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   0.91 
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    21   3.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   8.4  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 30.3 bits (65), Expect = 0.006
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = -2

Query: 321 AVNFKEAGGGKVTKAAEKATK 259
           AV FK+A G KVTKAAEKA K
Sbjct: 440 AVTFKDAAG-KVTKAAEKAQK 459


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 26.6 bits (56), Expect = 0.074
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = -2

Query: 321 AVNFKEAGGGKVTKAAEKATK 259
           +V FK+  G KVTKAAEKA K
Sbjct: 440 SVTFKDTQG-KVTKAAEKAQK 459


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 0.91
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 182 REKGLQTHSFSIFFTRLGNVPLFFILYKVIHNISE 78
           R  GL+   +  FF  +G+VP+   L +++ + S+
Sbjct: 392 RSIGLKCLEYLFFFKMIGDVPIDDFLVEMLESRSD 426


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 0.91
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 182 REKGLQTHSFSIFFTRLGNVPLFFILYKVIHNISE 78
           R  GL+   +  FF  +G+VP+   L +++ + S+
Sbjct: 392 RSIGLKCLEYLFFFKMIGDVPIDDFLVEMLESRSD 426


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 76  VSDILCITLYKIKN 117
           V DI+C  +YKI++
Sbjct: 119 VDDIICTRVYKIQD 132


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -3

Query: 122 PLFFILYKVIHNISETF 72
           P+F+ LYK + N+ + +
Sbjct: 432 PVFYQLYKKVMNLYQQY 448


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,957
Number of Sequences: 438
Number of extensions: 1635
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)