Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021253X
         (322 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37050.1 68417.m05247 patatin, putative similar to patatin-li...    27   2.1  
At5g43020.1 68418.m05248 leucine-rich repeat transmembrane prote...    27   2.8  
At4g19670.1 68417.m02889 zinc finger (C3HC4-type RING finger) fa...    27   2.8  
At2g04500.1 68415.m00455 DC1 domain-containing protein contains ...    27   2.8  
At1g45616.1 68414.m05200 leucine-rich repeat family protein cont...    26   4.9  
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ...    26   6.5  
At5g18490.1 68418.m02181 expressed protein                             26   6.5  
At5g17160.1 68418.m02010 expressed protein                             26   6.5  
At3g44570.1 68416.m04790 hypothetical protein                          25   8.6  
At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein ...    25   8.6  

>At4g37050.1 68417.m05247 patatin, putative similar to patatin-like
           latex allergen [Hevea brasiliensis][PMID:10589016];
           contains patatin domain PF01734
          Length = 339

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -3

Query: 221 LPLGFLHPPKVFPREKGLQTHSFSIFFTRLGNVPLFFILYKVIHNISETFCYDCKL 54
           +P    H PK+FP+ +G+    +     RL   P F    K +H++ E F  D KL
Sbjct: 26  VPFYLKHSPKIFPQPRGIFC-GWGETIVRLVGGPKF--NGKYLHDLVEGFLGDTKL 78


>At5g43020.1 68418.m05248 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 669

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 216 WKKNCAVNSSSYFCPWW 266
           W K   +N+SS+FC WW
Sbjct: 55  WNK---INTSSHFCQWW 68


>At4g19670.1 68417.m02889 zinc finger (C3HC4-type RING finger)
           family protein contains a Prosite:PS00518 Zinc finger,
           C3HC4 type (RING finger), signature and Pfam domain
           PF01485: IBR domain
          Length = 532

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +3

Query: 138 CKKYRKGMSLKPFFPRKNLRGMEEPKWKKNCAVNSSSYFCPW 263
           CK Y      K F P    +  EE      C+ N+   +CP+
Sbjct: 255 CKHYLSAAECKSFLPVTTFKSFEE---ANVCSKNNGKIYCPY 293


>At2g04500.1 68415.m00455 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 495

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 92  HNISETFCYDCKLKCKF 42
           + ++  FC+ C+L+CKF
Sbjct: 444 NGVTRPFCFHCELRCKF 460


>At1g45616.1 68414.m05200 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to disease resistance
           protein [Lycopersicon esculentum] gi|3894383|gb|AAC78591
          Length = 994

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/40 (25%), Positives = 25/40 (62%)
 Frame = +1

Query: 34  YSMNLHFSLQS*QNVSDILCITLYKIKNNGTLPSLVKNIE 153
           +++NL  SL +    + +L +++Y    +GT+P+ + N++
Sbjct: 263 HNLNLEGSLPNFLRNNSLLKLSIYNTSFSGTIPNSISNLK 302


>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 541

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -3

Query: 149 IFFTRLGNVPLFFILYKVIHNISET--FCYDCKLKCKF 42
           +++T++G   L +   +V+ N   T  FC  CK++CKF
Sbjct: 482 LYYTKVG---LVYPGLEVLPNNGATRPFCNSCKVRCKF 516


>At5g18490.1 68418.m02181 expressed protein
          Length = 553

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 155 RNEFEALFPSEKPSGDGGTQVEEK 226
           RN FE+LFP E    +G T  +EK
Sbjct: 521 RNSFESLFPIELYGEEGPTGPKEK 544


>At5g17160.1 68418.m02010 expressed protein
          Length = 569

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 275 PKRPPRAEVARAVNSTIFLPLGFLHPPKVFPR 180
           P  PPR E A+ + +T+  P         FPR
Sbjct: 445 PNSPPRLEEAKVIKTTLVSPFAVESISTQFPR 476


>At3g44570.1 68416.m04790 hypothetical protein
          Length = 239

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 73  NVSDILCITLYKIKNN 120
           NV+ +LC TL K+KNN
Sbjct: 186 NVAAVLCDTLVKMKNN 201


>At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 536

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 188 FPREKGLQTHSFSIFFTRLGNV 123
           FP E     H  SI+FT  G+V
Sbjct: 323 FPAESSFTEHDVSIYFTSYGHV 344


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,247,580
Number of Sequences: 28952
Number of extensions: 115765
Number of successful extensions: 306
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 350523880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)