Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021252X
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    26   3.1  
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch...    26   3.1  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    25   5.5  

>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/63 (22%), Positives = 27/63 (42%)
 Frame = +3

Query: 99  RRKSSGITSLSFNQDQGCFTCCLKTGLRVYNVEPLVEKAHYSKEELGEVSLCRWCSAPTG 278
           ++ S    S +     G  TCC   G+  Y+++ +++        L +  +CRWC +   
Sbjct: 629 KKLSDSSLSTTTTDSHGLPTCCYDIGM--YDLQKILK--------LKKTPICRWCHSKRS 678

Query: 279 YSW 287
             W
Sbjct: 679 SEW 681


>SPAC22A12.14c |||BSD domain protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +2

Query: 38  ENIQNIKSMFMIISRRRRHGAPEEQWHNELEFQSGPRLFHMLSEDWP 178
           E +QN  +   IIS    HG   E W  E+          +L E++P
Sbjct: 143 ELVQNENTFTQIISEPS-HGITFESWEKEISIDGKTEEISLLLEEYP 188


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 480 SSELPLCAIARNPTRRRYWP 539
           SS LP  +IA N  R+R WP
Sbjct: 147 SSPLPPMSIAMNIARKRSWP 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,123,554
Number of Sequences: 5004
Number of extensions: 44276
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)