Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021252X
(543 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0081 - 40959279-40959375,40959463-40959589,40960138-409603... 40 0.002
01_01_0476 + 3505799-3506479,3506639-3506897,3508427-3508550,350... 35 0.048
01_01_1064 + 8393519-8394475 34 0.084
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 32 0.34
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85... 30 1.0
02_05_0171 - 26441007-26441918 30 1.4
04_03_0517 + 16712487-16712570,16713715-16714059,16714149-167143... 29 1.8
04_04_1592 - 34649484-34649547,34650118-34650186,34650325-346504... 29 2.4
08_02_1046 - 23919990-23920183,23920251-23920479,23920624-239210... 29 3.2
12_01_0713 - 6178517-6178747 27 7.3
10_01_0275 - 2904601-2904900,2905083-2905233,2905522-2905598,290... 27 7.3
08_02_1509 + 27611628-27611810,27611890-27612903,27612996-276139... 27 9.7
07_01_0249 - 1844894-1845363,1845557-1848158 27 9.7
>01_07_0081 -
40959279-40959375,40959463-40959589,40960138-40960339,
40962414-40963361
Length = 457
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +3
Query: 126 LSFNQDQGCFTCCLKTGLRVYNVEPLVE 209
+SFNQD GCF K+G R+YN +P E
Sbjct: 102 ISFNQDYGCFAAGTKSGFRIYNCDPFRE 129
Score = 37.9 bits (84), Expect = 0.005
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +2
Query: 194 GAPGREGALQ*RGAGRGVPMQMVFRTNWLLVVKARK-----PYSLLLLDDQQRAFKAEVV 358
GA G G + G G GV ++M+FR N L +V P +++ DD Q E+
Sbjct: 136 GAAGDNG-VGGGGGGIGV-VEMLFRCNILALVGGGDAPHYPPNKVMIWDDHQSRCIGELS 193
Query: 359 FKSPIRALRARKDK 400
F+SP+R +R R+D+
Sbjct: 194 FRSPVRGVRLRRDR 207
>01_01_0476 +
3505799-3506479,3506639-3506897,3508427-3508550,
3508922-3509030
Length = 390
Score = 34.7 bits (76), Expect = 0.048
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 117 ITSLSFNQDQGCFTCCLKTGLRVYNVEPLVE 209
+ S+S+NQD GCF G R++N +P E
Sbjct: 20 LLSVSWNQDFGCFAAGTSNGFRIFNCDPFKE 50
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = +2
Query: 227 RGAGRGVPMQMVFRTNWLLVVKARK-----PYSLLLLDDQQRAFKAEVVFKSPIRALRAR 391
+ G G+ ++M+FR N L +V P +++ DD + E F+S +RA++
Sbjct: 57 KSGGFGI-VEMLFRCNILALVGGGSNAHYPPNKVMIWDDHRSHCIGEFAFRSDVRAVKLG 115
Query: 392 KD 397
KD
Sbjct: 116 KD 117
>01_01_1064 + 8393519-8394475
Length = 318
Score = 33.9 bits (74), Expect = 0.084
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = -1
Query: 249 GTPRPAPLYCNAPSRPGAPHYRHAGQSSDSM*NSLGPD*NSSSLCHCSSGAPCLRRR 79
G RP P + S P +PH + SDS +S ++SS SS A RRR
Sbjct: 150 GGQRPPPRRARSASPPRSPHLAKIAEPSDSFASSSSSSTSTSSSSSSSSSAKSTRRR 206
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 31.9 bits (69), Expect = 0.34
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 84 VEDMARRKSSGIT--SLSFNQDQGCFTCCLKTGLRVYNVEPLVE 209
VE+ + G+ S+S+NQD CF G RV++ +P E
Sbjct: 202 VEEASGSDDDGVELLSVSWNQDNSCFIAATTNGFRVFSCKPFHE 245
>11_01_0110 +
850780-850805,851465-851537,851558-851720,851947-852260,
852330-852409,852506-852848,853068-853166,853240-853360,
853567-853723,853976-854099,855275-855368,855866-857259,
857882-857924,858240-858458,859379-859605,859701-859948,
860246-860552,860725-861153
Length = 1486
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 252 IGTPRPAPLYCNAPSRPGAPHYRHAGQSSDSM 157
I P+ PL C S P APH RH+ S S+
Sbjct: 38 IQMPQKVPLPCYLQSPPSAPHPRHSAAFSRSL 69
>02_05_0171 - 26441007-26441918
Length = 303
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +1
Query: 256 DGVPHQLATRGESSEAVQPPPAGRPATCLQS*GGLQVAD 372
D + H L E + A P P RP C S G VAD
Sbjct: 14 DSIRHHLLEEEEETPATAPAPTRRPVYCRSSSFGSLVAD 52
>04_03_0517 +
16712487-16712570,16713715-16714059,16714149-16714301,
16714889-16714972,16715426-16715479,16715552-16715647,
16716163-16716258,16716941-16717086,16717650-16717799,
16717889-16718018,16718128-16718787,16718881-16718979,
16719058-16719210,16719323-16720054,16720338-16720640
Length = 1094
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 220 TVKRSWARCPYADGV-PHQLATRGESSEAVQPPPAGRPATCL 342
T++R+W+ DGV P+ LAT E S PP G A L
Sbjct: 4 TLRRAWSSLNGNDGVLPYFLATLNEVSLLQARPPPGHAAAAL 45
>04_04_1592 -
34649484-34649547,34650118-34650186,34650325-34650444,
34650630-34650742,34650824-34650898,34651224-34651346,
34651427-34651446,34652354-34652410,34652922-34653860,
34653961-34654189,34654296-34654439,34654527-34654601,
34655363-34655433,34656103-34656205,34656407-34656633,
34656791-34656908,34657239-34657369,34657709-34657802
Length = 923
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 105 KSSGITSLSFNQDQGCFTCCLKTGLRVYNVEPL 203
+++G+ S++FN D C L L+V++ EP+
Sbjct: 248 ETTGVRSMTFNPDGRSLLCGLHESLKVFSWEPI 280
>08_02_1046 -
23919990-23920183,23920251-23920479,23920624-23921057,
23921426-23921567,23922163-23922255,23923132-23923245,
23924181-23924266,23924458-23924506,23924717-23924783,
23925550-23925665,23925698-23925821,23926465-23926553,
23926810-23927061
Length = 662
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 208 RRRIT--VKRSWARCPYADGVPHQLATRGESSEAVQPPPAGRPA 333
RR +T ++ W P P A RGE++ + QPPP PA
Sbjct: 37 RRHLTQALESFWRHAPRP--APPAAAARGEANRSWQPPPLENPA 78
>12_01_0713 - 6178517-6178747
Length = 76
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 264 NTICIGTPRPAPLYCNAPSRPGAPHYRH 181
N +C+ PRP+P C P R A H H
Sbjct: 44 NKVCV--PRPSPEGCPIPPRAEAQHMYH 69
>10_01_0275 -
2904601-2904900,2905083-2905233,2905522-2905598,
2907201-2907390,2908796-2908981,2910521-2910571,
2911476-2911885,2912252-2912509,2912768-2913070
Length = 641
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +3
Query: 81 GVEDMARRKSSGITSLSFNQDQGCFT--CCLKTGLRVYNVEPLVEKAHYSKEELGEVSLC 254
G+ + + +S + SL + GC T G +N+E L ++ + E G +S+
Sbjct: 220 GLVEFVKIRSKSLVSLDISFCNGCITYRSLYAIGTYCHNLEVLSVESKHVNENKGMISVA 279
Query: 255 RWC 263
+ C
Sbjct: 280 KGC 282
>08_02_1509 +
27611628-27611810,27611890-27612903,27612996-27613978,
27614079-27614352
Length = 817
Score = 27.1 bits (57), Expect = 9.7
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 541 RGQYLRRVGFRAMAHSGNSEDGVRSNATRWNVGNANT*HAGRQD 410
RG++ R GF A+A + + VR TR N N H G +D
Sbjct: 222 RGEHQIRKGFLALAVAAGAVWMVRPAVTRINKRNVGQHHVGVRD 265
>07_01_0249 - 1844894-1845363,1845557-1848158
Length = 1023
Score = 27.1 bits (57), Expect = 9.7
Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Frame = -1
Query: 390 LARNARIGDLKTTSALKARCWSS--SRRRLYGFRAFTTSSQLVRNTICIGTPRPAPLYCN 217
L+RN G++ T A + S L G T T +G P Y
Sbjct: 559 LSRNQLDGEIPATIAAMQSLTAVDFSYNNLSGLVPATGQFSYFNATSFVGNPGLCGPYLG 618
Query: 216 APSRPGAPHYRHAGQSSDSM*NS 148
P PGAP H G+S + NS
Sbjct: 619 -PCHPGAPGTDHGGRSHGGLSNS 640
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,465,881
Number of Sequences: 37544
Number of extensions: 375530
Number of successful extensions: 1311
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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