Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021252X
         (543 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.80 
SB_30632| Best HMM Match : Acyltransferase (HMM E-Value=0.0097)        29   2.5  
SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)                    29   2.5  
SB_57869| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_16794| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_727| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   7.5  

>SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1660

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -2

Query: 236 QLLFTVMRLLDQGLHIIDTQASLQTACETALVLIETQARYATALPARHVFD 84
           QLL  +  LLD  L + D  +S   AC+  L +++ +    T    R +FD
Sbjct: 240 QLLGNLCVLLDYNLDLYDGSSSTTDACKEFLDIVDIRTEKVTGKTIRTIFD 290


>SB_30632| Best HMM Match : Acyltransferase (HMM E-Value=0.0097)
          Length = 263

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -2

Query: 404 PPYLSWPATLVSAT*RPPQL*RHVAGR---PAGGGCTASELSPRVASWCGT 261
           PP+ SW  +  + T RP Q  R + G    P  G  +A+EL+  V  W  T
Sbjct: 72  PPFASWRNSEEARTDRPSQQLRSLNGEWDAPCSGALSAAELTFLVDWWSET 122


>SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)
          Length = 1719

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -2

Query: 284  RVASWCGTP-SA*GHLAQLLFTVMRLLDQGLHIIDTQASLQTACETALVLIETQARY 117
            +V  WC    S        +F+ MR+LD G H  D   +++ + E  LV +    RY
Sbjct: 1382 KVGVWCSNDKSVWSCFYSYIFSCMRILDGGKHYYD--EAMRNSHEDLLVAVRNMRRY 1436


>SB_57869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = -2

Query: 353 PQL*RHVAGRPAGGGCTASELSPRVASWCGTPSA*GHLAQLLFTVMRLLDQGLHIIDTQA 174
           P+  R   G PA   CT ++ S + +S C +  +    A +   +MRL+ +G+H   T  
Sbjct: 305 PRAIRCKIGCPAS--CTCTKASSKCSSLCSSIESFNDKAAVNAALMRLVQRGMHQEPTLP 362

Query: 173 SLQTACETAL 144
           S Q   + AL
Sbjct: 363 SDQMNYKPAL 372


>SB_16794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1407

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
 Frame = -2

Query: 404  PPYLSWPATLVSAT*RPPQL*RHVAGR---PAGGGCTASELSPRVASWCGTPSA*GHLAQ 234
            PP+ SW  +  + T RP Q  R + G    P  G  +A+  S R     G P+    + Q
Sbjct: 1123 PPFASWRNSEEARTDRPSQQLRSLNGEWDAPCSGALSAAGNSARTEE--GRPTQLAEILQ 1180

Query: 233  --LLFTVMRLLDQGLHII 186
              + F + R +D+ + ++
Sbjct: 1181 GKINFFLYRPIDENVQVV 1198


>SB_727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 351 SALKARCWSSSRRRLYGFRAFTTSSQLVRNTICIGTPR 238
           S + ARC S S   +   +++T  +Q  RN   +G PR
Sbjct: 37  SCMSARCSSVSAHVITSAKSWTLQAQKARNPCRLGIPR 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,828,488
Number of Sequences: 59808
Number of extensions: 387353
Number of successful extensions: 4463
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4460
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)