Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021252X
         (543 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   3.5  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   3.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   6.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.1  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 12  IIEVKMSKVKIFKISNQCL 68
           I + K SK+KI+K +NQ L
Sbjct: 83  ISQQKTSKLKIYKWNNQIL 101


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 12  IIEVKMSKVKIFKISNQCL 68
           I + K SK+KI+K +NQ L
Sbjct: 66  ISQQKTSKLKIYKWNNQIL 84


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 298 PSFHHE*PVGAEHHLHRDTSP 236
           PS+H      +++H HR +SP
Sbjct: 314 PSYHPHQHHPSQYHPHRGSSP 334


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = +3

Query: 246 SLCRWCSAPTGYSW 287
           +L +W +  TG+ W
Sbjct: 343 ALAKWANGQTGFPW 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,889
Number of Sequences: 438
Number of extensions: 3072
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)