Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021251
(709 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 30 1.6
10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142 30 2.1
03_04_0006 + 16257288-16259522 30 2.1
06_03_0854 + 25400855-25403741,25406174-25407708 29 3.6
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 4.8
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 6.3
01_06_0456 + 29521282-29522064 28 6.3
01_05_0635 - 23847255-23847287,23847397-23848083,23848178-238485... 28 6.3
12_02_0077 - 13288916-13289659,13289689-13289691 28 8.4
07_01_0861 + 7152976-7153061,7153222-7153310,7154862-7155013,715... 28 8.4
04_01_0416 - 5504415-5504590,5509032-5509116,5509190-5509322,550... 28 8.4
>01_07_0197 +
41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 506 P*YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 619
P YK F A G RKV GIT + PS+ D+AF S +G
Sbjct: 631 PYYKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669
>10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142
Length = 407
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/84 (26%), Positives = 35/84 (41%)
Frame = -2
Query: 408 ELALGHLRYSLTDVPPQSNSPPGSVLEPDHAGVLNGDERFRHVTTLHAWNENRAPADIID 229
E GH + + D N PGS + +H+ VLN + R A++ R D ++
Sbjct: 313 ETQAGHWQNGVLDTLSTQNIIPGSPIAVNHSKVLNAVQEARRAAE-RAYDVPRVD-DKVN 370
Query: 228 RAPLPPNRVSNETMKVVVFQRRSR 157
RA N+ +N V + R
Sbjct: 371 RAVASANKAANAARVAAVKAAQKR 394
>03_04_0006 + 16257288-16259522
Length = 744
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -3
Query: 158 AKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 6
A+RSP Y T L + ARL T PA SP +AV S + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 158 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 33
AKR+PT T P AR +++ +F +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 287 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 376
+KR P K PA S S+ LPG + + G SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 366 PPQSNSPPGSVLEPDHAGVLNGDE 295
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
>01_06_0456 + 29521282-29522064
Length = 260
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -1
Query: 346 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER 257
AW+C P +G+RG +RRR P S R R
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSR 43
>01_05_0635 -
23847255-23847287,23847397-23848083,23848178-23848540,
23848633-23848725,23848820-23848870,23849031-23849304,
23849766-23850595
Length = 776
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = -2
Query: 258 ENRAPADIIDRAPLPPNRVSNETMKVVVFQRRS----RETISH 142
EN AP + +RAP PP ++ VVVF R++ +E +SH
Sbjct: 113 ENMAPPE--ERAPPPPPAPPPKSSHVVVFSRQADPTEKENVSH 153
>12_02_0077 - 13288916-13289659,13289689-13289691
Length = 248
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 101 ESSSTGSSFPADSPKPVPLAVVSLDSR 21
++ S G S P DS + VP+ VV+L R
Sbjct: 3 DNQSLGKSLPKDSRRHVPVGVVALKKR 29
>07_01_0861 +
7152976-7153061,7153222-7153310,7154862-7155013,
7155254-7155382,7155465-7155581,7156353-7156496,
7156749-7156851,7157471-7157565,7157953-7158096
Length = 352
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -2
Query: 342 GSVLEPDHAGVLNGDERFRHVTT-LHAWNENRAPADIIDRAPLPPNRVSNETMKVV 178
GS+ + D L G + H+ LH E PA+IID + +E +K V
Sbjct: 184 GSIKDADKEEKLKGKPGYEHLNDPLHILIEAELPANIIDTRLRQAQEIMDELLKPV 239
>04_01_0416 -
5504415-5504590,5509032-5509116,5509190-5509322,
5509426-5510312
Length = 426
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = -3
Query: 131 PLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDS 24
PL+ P AR SSTGSSFP S P ++ L S
Sbjct: 47 PLIHPTPARF-ISSTGSSFPPYSEPPPSAPMLELGS 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,685,799
Number of Sequences: 37544
Number of extensions: 468079
Number of successful extensions: 1615
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1612
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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