Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021251
(709 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z96102-2|CAI79216.1| 746|Caenorhabditis elegans Hypothetical pr... 32 0.35
Z93396-3|CAB07712.1| 597|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 29 2.5
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 29 2.5
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z82060-4|CAB04885.2| 434|Caenorhabditis elegans Hypothetical pr... 29 4.3
U23182-1|ABD94104.1| 468|Caenorhabditis elegans Hypothetical pr... 29 4.3
U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical pr... 28 5.7
AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical ... 28 7.5
>Z96102-2|CAI79216.1| 746|Caenorhabditis elegans Hypothetical
protein H39E23.3 protein.
Length = 746
Score = 32.3 bits (70), Expect = 0.35
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = -1
Query: 364 APVKLPAWQCPRTGSRGSFKR----RRAFPPRHHSARLERK-PCARRYYRPRTASAQPSK 200
APVK A + P+T S S K+ R A PP+ SA E+K P R +P+T SA K
Sbjct: 325 APVKREADK-PKTESADSEKKAPTKREADPPKTESADSEKKAPAKREADKPKTESADSEK 383
Score = 31.5 bits (68), Expect = 0.61
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -1
Query: 373 RCTAPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSARLERK-PCARRYYRPRTASAQPSK 200
R T PVKLP + +R A PP+ SA E+K P R +P+T SA K
Sbjct: 29 RETEPVKLPTADSEKKAPT----KREADPPKTESADSEKKAPTKRESDKPKTESADSEK 83
Score = 30.7 bits (66), Expect = 1.1
Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = -1
Query: 364 APVKLPAWQCPRTGSRGSFKR----RRAFPPRHHSARLERK-PCARRYYRPRTASAQPSK 200
APVK A P+T S S K+ R A PP+ SA E+K P R P+T SA K
Sbjct: 425 APVKREA-DPPKTESADSEKKAPTKREADPPKTESADSEKKAPAKREADPPKTESADSEK 483
Score = 30.3 bits (65), Expect = 1.4
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = -1
Query: 364 APVKLPAWQCPRTGSRGSFKR----RRAFPPRHHSARLERK-PCARRYYRPRTASAQPSK 200
AP K A P+T S S K+ R A PP+ SA E+K P R +P+T SA K
Sbjct: 485 APAKREA-DPPKTESADSEKKAPAKREADPPKTESADSEKKAPVKREADKPKTESADSEK 543
Score = 30.3 bits (65), Expect = 1.4
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = -1
Query: 364 APVKLPAWQCPRTGSRGSFKR----RRAFPPRHHSARLERK-PCARRYYRPRTASAQPSK 200
AP K A P+T S S K+ R A PP+ SA E+K P R +P+T SA K
Sbjct: 605 APAKREA-DPPKTESADSEKKAPAKREADPPKTESADSEKKAPVKREADKPKTESADSEK 663
Score = 29.1 bits (62), Expect = 3.3
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = -1
Query: 364 APVKLPAWQCPRTGSRGSFKR----RRAFPPRHHSARLERK-PCARRYYRPRTASAQPSK 200
AP K A P+T S S K+ R A PP+ SA E+K P R P+T SA K
Sbjct: 445 APTKREA-DPPKTESADSEKKAPAKREADPPKTESADSEKKAPAKREADPPKTESADSEK 503
Score = 29.1 bits (62), Expect = 3.3
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = -1
Query: 364 APVKLPAWQCPRTGSRGSFKR----RRAFPPRHHSARLERK-PCARRYYRPRTASAQPSK 200
AP K A P+T S S K+ R A PP+ SA E+K P R P+T SA K
Sbjct: 465 APAKREA-DPPKTESADSEKKAPAKREADPPKTESADSEKKAPAKREADPPKTESADSEK 523
Score = 29.1 bits (62), Expect = 3.3
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = -1
Query: 364 APVKLPAWQCPRTGSRGSFKR----RRAFPPRHHSARLERK-PCARRYYRPRTASAQPSK 200
AP K A + P+T S S K+ R A PP+ SA E+K P R P+T SA K
Sbjct: 565 APAKREADK-PKTESADSEKKAPAKREADPPKTESADSEKKAPAKREADPPKTESADSEK 623
Score = 29.1 bits (62), Expect = 3.3
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = -1
Query: 364 APVKLPAWQCPRTGSRGSFKR----RRAFPPRHHSARLERK-PCARRYYRPRTASAQPSK 200
AP K A P+T S S K+ R A PP+ SA E+K P R P+T SA K
Sbjct: 585 APAKREA-DPPKTESADSEKKAPAKREADPPKTESADSEKKAPAKREADPPKTESADSEK 643
Score = 28.7 bits (61), Expect = 4.3
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Frame = -1
Query: 364 APVKLPAWQCPRTGSRGSFKR----RRAFPPRHHSARLERK-PCARRYYRPRTASA 212
AP K A + P+T S S K+ R A PP+ SA E+K P R +P+T SA
Sbjct: 685 APAKREADK-PKTESADSEKKASAKREADPPKTESADSEKKAPVKREADKPKTESA 739
>Z93396-3|CAB07712.1| 597|Caenorhabditis elegans Hypothetical
protein ZC15.5 protein.
Length = 597
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -2
Query: 294 RFRHVTTLHAWN-ENRAPADIIDRAPLPPNRVSNETMKVVVFQRR-SRETISH 142
+F + HAW + RAP II R P + + M + QR+ SR ++ H
Sbjct: 545 QFSRIEHTHAWTCQTRAPTTIILRCPAAAQLLEAQEMTELQHQRQSSRYSVRH 597
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/77 (27%), Positives = 37/77 (48%)
Frame = -2
Query: 381 SLTDVPPQSNSPPGSVLEPDHAGVLNGDERFRHVTTLHAWNENRAPADIIDRAPLPPNRV 202
+++D S+SP + D L+ D+ + + +WNE R D I+ PLP N +
Sbjct: 729 TISDTSTTSSSPSSTTA--DSTSTLSVDQFDFILDSGLSWNETRHNEDSINIVPLPTNAI 786
Query: 201 SNETMKVVVFQRRSRET 151
+ T + F+ R+ T
Sbjct: 787 T-PTERSQTFECRNVST 802
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/77 (27%), Positives = 37/77 (48%)
Frame = -2
Query: 381 SLTDVPPQSNSPPGSVLEPDHAGVLNGDERFRHVTTLHAWNENRAPADIIDRAPLPPNRV 202
+++D S+SP + D L+ D+ + + +WNE R D I+ PLP N +
Sbjct: 729 TISDTSTTSSSPSSTTA--DSTSTLSVDQFDFILDSGLSWNETRHNEDSINIVPLPTNAI 786
Query: 201 SNETMKVVVFQRRSRET 151
+ T + F+ R+ T
Sbjct: 787 T-PTERSQTFECRNVST 802
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 29.5 bits (63), Expect = 2.5
Identities = 24/76 (31%), Positives = 33/76 (43%)
Frame = -1
Query: 334 PRTGSRGSFKRRRAFPPRHHSARLERKPCARRYYRPRTASAQPSK**NNESSGFSATIAR 155
PR SR S +RR PPR S +RK R R + S P + S S + +
Sbjct: 87 PRRRSR-SPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPVRESRRRSESRSPS-PK 144
Query: 154 NDLPLMLHLSCLLTMP 107
DL L ++S + P
Sbjct: 145 RDLQLRANISVSYSSP 160
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
F54B3.1b protein.
Length = 3394
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 173 FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 54
F DD K ++ S + ESSSTGSS +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
F54B3.1a protein.
Length = 3396
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 173 FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 54
F DD K ++ S + ESSSTGSS +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468
>Z82060-4|CAB04885.2| 434|Caenorhabditis elegans Hypothetical
protein T27F6.6 protein.
Length = 434
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Frame = -2
Query: 396 GHLRYSLTDVPPQSNSPPGSVLE-PDHAGV---LNGDERFRHVTTLHAWNENR 250
G L + N PG L DH G+ D+RFRH +++ W NR
Sbjct: 292 GRCNVKLEECEITLNQIPGEDLNYSDHVGLRARFTIDDRFRHEKSVNTWEPNR 344
>U23182-1|ABD94104.1| 468|Caenorhabditis elegans Hypothetical
protein F40B5.2a protein.
Length = 468
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 261 NENRAPADIIDRAPLP-PNRVSNETMKVVVFQRRSRETISHLCYTSHVSL 115
N N + +D LP PN V N ++++ FQ ++ + + SH+++
Sbjct: 79 NSNESESDFAMNTLLPSPNPVGNRRLRLICFQDIAQALMMLFLFLSHIAM 128
>U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical
protein B0432.7 protein.
Length = 621
Score = 28.3 bits (60), Expect = 5.7
Identities = 26/79 (32%), Positives = 39/79 (49%)
Frame = +1
Query: 22 LLSSETTAKGTGLGESAGKEDPVELDSSLAL*GDMRGVA*VGDRFARSSLKNHYFHCFIT 201
+ S TT+ + +S+ ++ LD AL G +R VA + DR R SLKN F+T
Sbjct: 32 IFSLATTSAARYVSDSSA-DNTTRLDE--ALNGMIRYVADM-DRATRLSLKNQQLKEFLT 87
Query: 202 YSVGRKRCAVDNIGGRTVF 258
Y+ + NI R+ F
Sbjct: 88 YTPVILNASTTNIVTRSKF 106
>AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical
protein Y53C10A.4 protein.
Length = 908
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = -3
Query: 170 SDDRAKRSPTYATP----LMSPYNARLESSSTGSSFPAD-SPKP 54
+DD R P + + L PY + SSS+ SS P+D +P+P
Sbjct: 681 NDDSDSRFPAFKSSSVAMLTEPYKSSSSSSSSTSSIPSDPAPRP 724
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,681,673
Number of Sequences: 27780
Number of extensions: 362248
Number of successful extensions: 1132
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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