Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021251
         (709 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot...    29   3.0  
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    28   5.3  
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi...    28   7.0  
At3g62370.1 68416.m07006 expressed protein                             28   7.0  
At5g05360.2 68418.m00577 expressed protein similar to unknown pr...    27   9.2  
At5g05360.1 68418.m00578 expressed protein similar to unknown pr...    27   9.2  
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    27   9.2  
At1g10890.1 68414.m01251 F-box family protein contains Pfam PF00...    27   9.2  

>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
           similar to SP|P22418 Fructose-1,6-bisphosphatase,
           chloroplast precursor (EC 3.1.3.11)
           (D-fructose-1,6-bisphosphate 1-phosphohydrolase)
           (FBPase) {Spinacia oleracea}; contains Pfam profile
           PF00316: fructose-1,6-bisphosphatase
          Length = 404

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 137 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 27
           A+ + SP+N+ L   S  SS  +D   P PL +VS D
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSND 141


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 406 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSL 510
           LS  R   W  RAK  L+Q+  TH+  E T+Y+S+
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSI 314


>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
           like protein A, Arabidopsis thaliana, gb:Q07970
          Length = 790

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 231 DRAPLPPNRVSNETMKVVVFQRRSRET 151
           +RAPLP   V  E +  + F +R +ET
Sbjct: 7   NRAPLPSPNVKKEALSSIPFDKRRKET 33


>At3g62370.1 68416.m07006 expressed protein
          Length = 361

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -2

Query: 354 NSPPGSVL--EPDHAGVLNGDERFRHVTTLHAWN 259
           N+ PG +    P   G  NG +RF H+  ++AWN
Sbjct: 160 NAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWN 193


>At5g05360.2 68418.m00577 expressed protein similar to unknown
           protein (pir||T02500)
          Length = 153

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 222 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 112
           P  P+R S      V  ++ +R+T SHL Y++ V L+
Sbjct: 20  PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56


>At5g05360.1 68418.m00578 expressed protein similar to unknown
           protein (pir||T02500)
          Length = 163

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 222 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 112
           P  P+R S      V  ++ +R+T SHL Y++ V L+
Sbjct: 20  PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56


>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
           to gi_11935088_gb_AAG41964
          Length = 209

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 149 SPTYATPLMSPYNARLESSSTGSSFPADSPK-PVPLA 42
           SPT +  + SP  A  ++ +  +S P +SPK P P++
Sbjct: 41  SPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVS 77


>At1g10890.1 68414.m01251 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 592

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = -1

Query: 310 FKRR-RAFPPRHHSARL----ERKPCARRYYRPRTASAQPS 203
           F+R+ R+  PR H +R      R P  +RY R ++ S+ PS
Sbjct: 2   FRRKSRSISPRRHRSRSVTPKRRSPTPKRYKRQKSRSSTPS 42


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,063,626
Number of Sequences: 28952
Number of extensions: 346591
Number of successful extensions: 1038
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)