Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021250X
         (537 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O45136 Cluster: Putative uncharacterized protein; n=2; ...    37   0.34 
UniRef50_Q26FN8 Cluster: Glycosyl hydrolase, alpha-amylase famil...    35   1.0  
UniRef50_Q9P4W1 Cluster: Cytochrome c oxidase polypeptide VIII, ...    34   1.8  
UniRef50_A3HLF4 Cluster: Phage integrase family protein; n=1; Ps...    33   3.1  
UniRef50_Q1D8G3 Cluster: Putative uncharacterized protein; n=1; ...    33   4.2  
UniRef50_A6EQD0 Cluster: Histidine kinase DhkJ; n=1; unidentifie...    33   4.2  
UniRef50_Q6XGF9 Cluster: Pilx5/VirB5-like protein; n=5; Enteroba...    32   7.3  
UniRef50_Q2CAU0 Cluster: Sensor protein; n=4; Rhodobacteraceae|R...    32   7.3  
UniRef50_Q1GL03 Cluster: Putative uncharacterized protein; n=6; ...    32   7.3  
UniRef50_A7EV49 Cluster: Predicted protein; n=1; Sclerotinia scl...    32   9.6  

>UniRef50_O45136 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 426

 Score = 36.7 bits (81), Expect = 0.34
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +2

Query: 269 FNLTWTSSSVPVEHPKDWNEKLAAQTLALEPWRDSQWSSMLGKWDEGSWLQWGTVQGRFQ 448
           F+LTWT+     +  K  +    A +LA+EPW    +  M     +  + Q+GT+ G F+
Sbjct: 214 FDLTWTNFGNQFDFDKMCSPTAIAHSLAIEPWSRGLFDKMRAS-HQSHYEQFGTISGDFR 272

Query: 449 --SFTAEG 466
             + TA G
Sbjct: 273 IGNHTASG 280


>UniRef50_Q26FN8 Cluster: Glycosyl hydrolase, alpha-amylase family;
           n=2; Flavobacteria|Rep: Glycosyl hydrolase,
           alpha-amylase family - Flavobacteria bacterium BBFL7
          Length = 556

 Score = 35.1 bits (77), Expect = 1.0
 Identities = 21/72 (29%), Positives = 29/72 (40%)
 Frame = +2

Query: 107 DGLSRHTGWSMAINNRWMACWRTEDTNFRAPLSNENFVQRSFKKNYRQCSQHVTFNLTWT 286
           DG+   TG+S A +  W   W T + ++      E  VQ +   N R     V  N T  
Sbjct: 109 DGVDEGTGYSYAFHGYWAKDWTTVEPSYGTQADFERLVQLAHDNNIR-ILLDVVINHTGP 167

Query: 287 SSSVPVEHPKDW 322
            +S     P DW
Sbjct: 168 VTSKDQVWPADW 179


>UniRef50_Q9P4W1 Cluster: Cytochrome c oxidase polypeptide VIII,
           mitochondrial precursor; n=1; Schizosaccharomyces
           pombe|Rep: Cytochrome c oxidase polypeptide VIII,
           mitochondrial precursor - Schizosaccharomyces pombe
           (Fission yeast)
          Length = 66

 Score = 34.3 bits (75), Expect = 1.8
 Identities = 23/62 (37%), Positives = 34/62 (54%)
 Frame = -3

Query: 478 RVKSAFRSKRLESSLHGSPLKPTSFIPFT*HRRPLTISPWFQSQGLCR*FLVPVFGMLYG 299
           + +SA R  R  SS H +P KP S IPF  +++PL    +F + G+   F +P   + Y 
Sbjct: 7   QARSALRGVRFSSS-HSAP-KPGSTIPFYINKKPLPTLLYFGTFGVI--FSIPFIVVKYH 62

Query: 298 NR 293
           NR
Sbjct: 63  NR 64


>UniRef50_A3HLF4 Cluster: Phage integrase family protein; n=1;
           Pseudomonas putida GB-1|Rep: Phage integrase family
           protein - Pseudomonas putida (strain GB-1)
          Length = 521

 Score = 33.5 bits (73), Expect = 3.1
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 535 SYACA-PNASFHSSSLQVFSRVKSAFRSKRLESSLHGSPLKPTS 407
           S +CA PN   HSS   +  RVKS F +  + S   G P+K TS
Sbjct: 301 SMSCARPNFHDHSSPEAIGHRVKSVFSALHVRSERTGEPIKVTS 344


>UniRef50_Q1D8G3 Cluster: Putative uncharacterized protein; n=1;
           Myxococcus xanthus DK 1622|Rep: Putative uncharacterized
           protein - Myxococcus xanthus (strain DK 1622)
          Length = 319

 Score = 33.1 bits (72), Expect = 4.2
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
 Frame = +2

Query: 191 RAPLSNENFVQRSFKKNYRQCSQHVTFNLTWTSSSVPVEHPKDWNEKLAAQTLALEPWR- 367
           R   + E +    +  N+       T    WT     ++  + W+   AAQ L  +PW  
Sbjct: 116 RLTTTPEQYAAALYLPNWYPRLSRYTARSVWTEG---MDAAEAWH---AAQALGPQPWLV 169

Query: 368 DSQWSSMLGKWDEGSWLQWGTVQGRFQSFTA 460
                S   +WDE  ++  GT Q RF+   A
Sbjct: 170 KDHVKSAKERWDEACFIPEGTTQARFEQICA 200


>UniRef50_A6EQD0 Cluster: Histidine kinase DhkJ; n=1; unidentified
           eubacterium SCB49|Rep: Histidine kinase DhkJ -
           unidentified eubacterium SCB49
          Length = 1008

 Score = 33.1 bits (72), Expect = 4.2
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +2

Query: 266 TFNLTWTSSSVPVEHPKDWNEKLAAQTLALEPWRDSQWSSMLGKWDEGSWLQWGT 430
           T N+TWTS+   V +P       A +T+ L   +D Q+   +   D+G+W  W T
Sbjct: 662 TKNVTWTSNKTLVLNPSQNQISFAYRTVDLMHPKDVQYRFQV---DDGAWSPWAT 713


>UniRef50_Q6XGF9 Cluster: Pilx5/VirB5-like protein; n=5;
           Enterobacteriaceae|Rep: Pilx5/VirB5-like protein -
           Escherichia coli
          Length = 235

 Score = 32.3 bits (70), Expect = 7.3
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +2

Query: 356 EPWRDSQWSSMLGKWDEGSWLQWGTVQG-RFQSFTAEGALDTTEYL-QTRGVKRGIGRAR 529
           +P RD QW+  L +W E +      +Q  + Q  TA G  D  +++ Q +G+K  + + R
Sbjct: 30  DPMRDVQWAQELKRWMETARHYQSQIQAYKDQLATATGVRDIADFVDQAKGLKADLEKLR 89


>UniRef50_Q2CAU0 Cluster: Sensor protein; n=4; Rhodobacteraceae|Rep:
           Sensor protein - Oceanicola granulosus HTCC2516
          Length = 415

 Score = 32.3 bits (70), Expect = 7.3
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 152 RWMACWRTEDTNFRAPLSNENFVQRSFKKNYRQCSQHVTFN 274
           RW+AC   ++ NF     +E  ++ +F ++ R  S+ V FN
Sbjct: 62  RWIACRTVDEVNFGLAAGDEIEIESTFCQSVRDTSEKVLFN 102


>UniRef50_Q1GL03 Cluster: Putative uncharacterized protein; n=6;
           Rhodobacterales|Rep: Putative uncharacterized protein -
           Silicibacter sp. (strain TM1040)
          Length = 227

 Score = 32.3 bits (70), Expect = 7.3
 Identities = 19/46 (41%), Positives = 22/46 (47%)
 Frame = +2

Query: 359 PWRDSQWSSMLGKWDEGSWLQWGTVQGRFQSFTAEGALDTTEYLQT 496
           P  D+ WS    KW   SWL W  V GR  +  + GALD T    T
Sbjct: 12  PCADAAWS----KWAT-SWLGWDIVAGREVAHPSAGALDVTTITAT 52


>UniRef50_A7EV49 Cluster: Predicted protein; n=1; Sclerotinia
           sclerotiorum 1980|Rep: Predicted protein - Sclerotinia
           sclerotiorum 1980
          Length = 93

 Score = 31.9 bits (69), Expect = 9.6
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 287 SSSVPVEHPKDWN-EKLAAQTLALEPWRDSQWSSMLGKWDEGSWLQW 424
           + S   E+P  W+ E+   +T+ L+ W D+  +S +G     SW  W
Sbjct: 27  TDSTDSENPLAWSAERFDEETMGLDKWVDTTSNSQVGGSSTTSWSDW 73


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 587,130,918
Number of Sequences: 1657284
Number of extensions: 12331494
Number of successful extensions: 34958
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 33815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34951
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34156095254
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)