Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021250X
         (537 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   1.7  
DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory pro...    22   3.0  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   3.9  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   3.9  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   3.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   5.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   5.2  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   5.2  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   6.9  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   6.9  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   6.9  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   6.9  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   9.1  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   9.1  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 17/80 (21%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = +2

Query: 104 TDGLSRHTGWSMAINNRWMACWRTEDTNFRAPLSNENFVQRSFKKNYRQCSQHVTFNLTW 283
           +D L+  T  S+ +N++ +  +RT  T  +     + F + ++    R+C      NL  
Sbjct: 53  SDKLNTSTTSSVNVNDQNIRRYRTAFTREQLARLEKEFFKENYVSRPRRCELAAQLNLPE 112

Query: 284 TSSSVPVEH--PKDWNEKLA 337
           ++  V  ++   KD  +++A
Sbjct: 113 STIKVWFQNRRMKDKRQRMA 132


>DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory
           protein 8 protein.
          Length = 99

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = +2

Query: 236 KNYRQCSQHVTFNLTWTSSSVPVEHPKDWN 325
           KN  +C      N    +  V  +HP  WN
Sbjct: 62  KNCERCDSRQVANARRIARYVQTKHPDVWN 91


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = +2

Query: 341 QTLALEPWRDSQWSSMLGKWDEGSW 415
           Q L    W + +W+    KW+E  +
Sbjct: 48  QILTTNAWLNLEWNDYNLKWNESEY 72


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = +2

Query: 341 QTLALEPWRDSQWSSMLGKWDEGSW 415
           Q L    W + +W+    KW+E  +
Sbjct: 48  QILTTNAWLNLEWNDYNLKWNESEY 72


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = +2

Query: 341 QTLALEPWRDSQWSSMLGKWDEGSW 415
           Q L    W + +W+    KW+E  +
Sbjct: 48  QILTTNAWLNLEWNDYNLKWNESEY 72


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +1

Query: 247 TMFSTCNV*FNVDLEFCSRRASQRLEREIS 336
           T+F T  +  NV   +C+++  + L+  +S
Sbjct: 83  TLFMTSQIKKNVTRAYCNKKIDRNLQFVVS 112


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +1

Query: 247 TMFSTCNV*FNVDLEFCSRRASQRLEREIS 336
           T+F T  +  NV   +C+++  + L+  +S
Sbjct: 83  TLFMTSQIKKNVTRAYCNKKIDRNLQFVVS 112


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 136 HGYQQQMDG 162
           HG QQQMDG
Sbjct: 99  HGPQQQMDG 107


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +3

Query: 123 TLVGAWLSTTDGWRAGGLKIQILEPRCRMRI-LYNGL 230
           TL+  W+     W    +  Q++ PR +  + ++N L
Sbjct: 499 TLIETWMPLLPQWILDNIYDQLIMPRIQAEVNIWNPL 535


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 332 ISRSSLWDALREQNSRSTLN*TLH 261
           +  SS +D L E++SRS  + +LH
Sbjct: 151 VGSSSPFDKLIEEDSRSNEDTSLH 174


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 332 ISRSSLWDALREQNSRSTLN*TLH 261
           +  SS +D L E++SRS  + +LH
Sbjct: 99  VGSSSPFDKLIEEDSRSNEDTSLH 122


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 332 ISRSSLWDALREQNSRSTLN*TLH 261
           +  SS +D L E++SRS  + +LH
Sbjct: 282 VGSSSPFDKLIEEDSRSNEDTSLH 305


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = +2

Query: 266 TFNLTWTSSSVPVEHPKDW 322
           TF+ TW    + + H +D+
Sbjct: 399 TFDETWAKLGLEINHKEDF 417


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 71  HNYFSHGLAPT*FPNSQ 21
           HNY++   APT +   Q
Sbjct: 298 HNYYAQNYAPTYYGQMQ 314


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,999
Number of Sequences: 336
Number of extensions: 3085
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13097125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)