Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021250X
         (537 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.16c |cox8||cytochrome c oxidase subunit VIII|Schizosacc...    34   0.012
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    27   2.3  
SPAC4A8.02c |||conserved protein|Schizosaccharomyces pombe|chr 1...    26   3.1  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    26   3.1  
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch...    26   4.1  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    25   5.4  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   5.4  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   7.2  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   9.5  

>SPAC24C9.16c |cox8||cytochrome c oxidase subunit
           VIII|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 66

 Score = 34.3 bits (75), Expect = 0.012
 Identities = 23/62 (37%), Positives = 34/62 (54%)
 Frame = -3

Query: 478 RVKSAFRSKRLESSLHGSPLKPTSFIPFT*HRRPLTISPWFQSQGLCR*FLVPVFGMLYG 299
           + +SA R  R  SS H +P KP S IPF  +++PL    +F + G+   F +P   + Y 
Sbjct: 7   QARSALRGVRFSSS-HSAP-KPGSTIPFYINKKPLPTLLYFGTFGVI--FSIPFIVVKYH 62

Query: 298 NR 293
           NR
Sbjct: 63  NR 64


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 112 IVPTHWLEHGYQQQMDGVLAD 174
           +V  +WL   YQQ++ G+LAD
Sbjct: 555 LVGVNWLHLLYQQKLSGILAD 575


>SPAC4A8.02c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 142

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 16/66 (24%), Positives = 28/66 (42%)
 Frame = +2

Query: 119 RHTGWSMAINNRWMACWRTEDTNFRAPLSNENFVQRSFKKNYRQCSQHVTFNLTWTSSSV 298
           +HT  ++ IN  W A  R +  +    +  E+   R   +       HV  +L   S +V
Sbjct: 44  QHTSAALTINENWDADTRADMNDILDKIVPESAGYRHTAEGLDDMPAHVKSSLIGPSLTV 103

Query: 299 PVEHPK 316
           P+ + K
Sbjct: 104 PITNGK 109


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 218 VQRSFKKNYRQCSQHVTFNLTWTSSSVPVEHP-KDWNEKLAAQTLALEPWR 367
           ++RS  ++Y+  +     +++  SSS P +HP   WN      T+ LEP++
Sbjct: 268 LERSVSRSYQSPASTPRSSVSSVSSSPPEDHPFFHWNVDYPV-TVRLEPFK 317


>SPAC4F10.18 |||WD repeat protein, human NUP37
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 338 AQTLALEPWRDSQWSSMLGKWDEGSWLQW 424
           A +LA   W  S  S +L     G+WL+W
Sbjct: 252 ASSLANVRWIGSDGSGILAMCKSGAWLRW 280


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -3

Query: 430 GSPLKPTSFIPFT*HRRPLTISPWFQSQGLCR*FLVPVFGMLYGNR 293
           G+P    S++P T         PWF+ Q L +  +V +F  L   R
Sbjct: 178 GTPEDFVSYLPSTDSNDKKFRKPWFEEQNLKKPLVVLLFNDLMDTR 223


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 178 FSPPARHPSVVDSHAPTSVSGQSIS 104
           +S P   PSV+    PT V G+++S
Sbjct: 578 YSEPNASPSVIPPRVPTPVPGRTLS 602


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = -1

Query: 213  FSFDN-GALKFVSSVRQHA-IHLLLIAMLQPVCRDNPSVRKMCRLLILYTQ 67
            + FD+  A++F S +R+ + I  L I    P  + NP++  +C LL+L T+
Sbjct: 1250 YGFDSLCAMRFFSLLRKSSGIGNLKI----PNMKSNPTIASLCELLVLPTE 1296


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +2

Query: 329 KLAAQTLALEPWRDSQWSSMLGKW 400
           K+      LE W +  W  +L KW
Sbjct: 420 KMLEYNRLLEEWEEKDWLKLLKKW 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,413,620
Number of Sequences: 5004
Number of extensions: 51396
Number of successful extensions: 158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)