Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021250X
(537 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161... 30 1.0
01_06_0962 + 33402971-33403345,33403633-33403767,33408316-33408597 30 1.0
10_05_0022 + 8157369-8157788 29 1.8
10_02_0113 + 5410413-5410471,5411330-5413309,5413535-5413594,541... 29 2.3
08_01_0246 - 2028701-2029060,2029149-2030606,2030729-2031160 29 3.1
02_05_1275 - 35395228-35395642,35396682-35397250 29 3.1
02_04_0231 + 21117887-21117935,21118710-21118825,21119049-211191... 29 3.1
01_03_0107 - 12613491-12613538,12613906-12614139,12614682-126147... 28 4.1
08_01_0574 + 5103466-5103534,5104526-5104806,5104959-5105127 28 5.4
04_04_1231 - 31934745-31935125,31935230-31935325,31936215-319362... 28 5.4
08_02_0175 + 13772394-13773094,13773329-13773860 27 7.2
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 27 7.2
12_02_0330 - 17612867-17613161,17613376-17613459,17613554-176137... 27 9.5
11_04_0294 - 15968656-15969074,15970832-15970931 27 9.5
09_02_0082 - 4060018-4061604 27 9.5
08_01_1014 - 10262705-10262719,10263545-10264288 27 9.5
07_01_0205 + 1481380-1481892 27 9.5
>04_03_1049 +
22015053-22015083,22015770-22015885,22016013-22016108,
22016229-22016285,22016468-22016620,22016754-22016838,
22017097-22017187,22017324-22017488,22017813-22017932,
22018020-22018104,22018234-22018402,22019055-22019173,
22019250-22019440,22019746-22019957,22020905-22021500,
22022538-22022658,22023439-22023868,22024412-22024797,
22024976-22025071,22025380-22025432,22026915-22027061,
22027139-22027309,22027880-22027962,22028049-22028247,
22028668-22028789,22029752-22029818,22029960-22030010,
22030768-22031001,22031263-22031451,22032455-22032646,
22032742-22032936
Length = 1673
Score = 30.3 bits (65), Expect = 1.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 347 LALEPWRDSQWSSMLGKWDEGS 412
++ PW DS W S+ +WDE S
Sbjct: 319 MSKSPWADSDWKSLKVQWDEPS 340
>01_06_0962 + 33402971-33403345,33403633-33403767,33408316-33408597
Length = 263
Score = 30.3 bits (65), Expect = 1.0
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 326 EKLAAQTL--ALEPWRDSQWSSMLGKWDEGSWLQWGTVQGRFQSFTAEGALDTT 481
+K+AA A P S+ S +L K+ EG WL W + F+ AEG L T+
Sbjct: 100 DKIAAAVFLCAFMPDHTSRPSHVLEKFIEGKWLDW--MDTEFKPQDAEGKLPTS 151
>10_05_0022 + 8157369-8157788
Length = 139
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +2
Query: 242 YRQCSQHVTFNLTWTSSSVP---VEHPKDWNEKLAAQTLALEPWRDSQWSSMLGKWDEG 409
+ Q +H TWTS+S V H W + ++ + P S+W S +WD G
Sbjct: 15 WTQAPRHSIRVSTWTSASEDRWHVPHDIQWGDNQPPRSSGV-PLSPSEWRSSSSRWDLG 72
>10_02_0113 +
5410413-5410471,5411330-5413309,5413535-5413594,
5416037-5418047
Length = 1369
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 377 WSSMLGKWDEGSWLQWGTVQGRFQSFTAEGAL 472
W K+ G WLQW +GR Q+ A+G L
Sbjct: 476 WDWDFSKY-RGMWLQWWLQEGRIQADIAQGIL 506
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 407 GSWLQWGTVQGRFQSFTAEGAL 472
G WLQW +GR Q A+G L
Sbjct: 1167 GMWLQWWLQEGRIQDDIAQGIL 1188
>08_01_0246 - 2028701-2029060,2029149-2030606,2030729-2031160
Length = 749
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = +2
Query: 221 QRSFKKNYRQCSQHVTFNLTWTSSSVPVEHPKDWNEKLAAQTLALEPWRDSQW 379
QR KK Y + +QH L P HP D K ++ L LEP + W
Sbjct: 85 QRPRKKRYHRHTQHQIQELEAFFKECP--HPDDKQRKELSRELGLEPLQVKFW 135
>02_05_1275 - 35395228-35395642,35396682-35397250
Length = 327
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 167 WRTEDTNFRAPLSNENFVQRSFKKNYRQCSQH 262
W TED +RA S + FV R R CS H
Sbjct: 229 WATEDGRYRADYSYQPFVARFSAFLLRGCSPH 260
>02_04_0231 +
21117887-21117935,21118710-21118825,21119049-21119144,
21119276-21119332,21119547-21119699,21119801-21119885,
21120022-21120139,21120278-21120442,21120795-21120914,
21121006-21121081,21121247-21121418,21121574-21122049,
21122130-21122320,21124348-21124583,21125799-21125959
Length = 756
Score = 28.7 bits (61), Expect = 3.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 344 TLALEPWRDSQWSSMLGKWDEGS 412
+++ PW +S W S+ +WDE S
Sbjct: 330 SMSTSPWANSDWRSLKVQWDEPS 352
>01_03_0107 -
12613491-12613538,12613906-12614139,12614682-12614713,
12616021-12616176,12617972-12618159,12618242-12618324,
12618821-12618976,12620320-12621162,12621197-12621550,
12621962-12623125
Length = 1085
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 181 IFSPPARHPSVVDSHAPTSVSGQSISS*DVPSFNFIYTIISAMGW 47
+FS R PSVV H+ T+ ++ D P F Y + S+ GW
Sbjct: 77 VFSSGDRDPSVVTLHSLTTGKNYYVTMPD-PPFRTRYIVGSSHGW 120
>08_01_0574 + 5103466-5103534,5104526-5104806,5104959-5105127
Length = 172
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +2
Query: 221 QRSFKKNYRQCSQHVTFNLTWTSSSVPVEHPKDWNEKLAAQTLALEPWRDSQW 379
QR KK Y + +QH + P HP D K ++ L LEP + W
Sbjct: 97 QRPRKKRYHRHTQHQIQEMEAFFKECP--HPDDKQRKELSRELGLEPLQVKFW 147
>04_04_1231 -
31934745-31935125,31935230-31935325,31936215-31936277,
31936393-31936593,31936738-31936839,31936972-31937430,
31937524-31937712,31938325-31938442,31939033-31939307,
31939853-31939930
Length = 653
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +2
Query: 221 QRSFKKNYRQCSQHVTFNLTWTSSSVPVEHPKDWNEKLAAQTLALEPWRDSQW 379
QR KK Y + +QH + P HP D K ++ L LEP + W
Sbjct: 98 QRPRKKRYHRHTQHQIQEMEAFFKECP--HPDDKQRKELSRELGLEPLQVKFW 148
>08_02_0175 + 13772394-13773094,13773329-13773860
Length = 410
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Frame = +2
Query: 242 YRQCSQHVTFNLTWTSSSVP---VEHPKDWNEKLAAQTLALEPWRDSQWSSMLGKWDEG 409
+ Q +H TW S+S H W + +++ + P S+W S +WD G
Sbjct: 295 WTQAPRHNIGVSTWASASDDRWCAPHDIQWGDNQPSRSSGVSP-SPSEWRSSFSRWDLG 352
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 27.5 bits (58), Expect = 7.2
Identities = 26/85 (30%), Positives = 39/85 (45%)
Frame = +2
Query: 275 LTWTSSSVPVEHPKDWNEKLAAQTLALEPWRDSQWSSMLGKWDEGSWLQWGTVQGRFQSF 454
+T SSV +E K +E+ Q LA + + G DE S T+Q +S
Sbjct: 1106 ITKLQSSVTIE--KQQHEETVVQ-LAEAQAKIDELLREAGDTDEKSTQLETTIQRLEESL 1162
Query: 455 TAEGALDTTEYLQTRGVKRGIGRAR 529
T + AL TTE +T K+ + A+
Sbjct: 1163 TEKDALLTTERQETEATKKLLSEAQ 1187
>12_02_0330 -
17612867-17613161,17613376-17613459,17613554-17613744,
17614085-17614995,17615081-17615252,17615337-17615412,
17615515-17615634,17615841-17616005,17616096-17616186,
17616644-17616785,17616848-17617042,17617132-17617185,
17617299-17617397,17618181-17618296,17618376-17618442
Length = 925
Score = 27.1 bits (57), Expect = 9.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 362 WRDSQWSSMLGKWDEGS 412
W DS+W S+ +WDE +
Sbjct: 366 WADSKWRSLKVRWDEAA 382
>11_04_0294 - 15968656-15969074,15970832-15970931
Length = 172
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 80 IKRRHILRTDGLSRHTGWSMAINNRWMACWRTEDT 184
IK I R+ + HT WS+ +N + W T+ T
Sbjct: 35 IKDPLIPRSSVMDPHTVWSLVVNPAILRSWATDPT 69
>09_02_0082 - 4060018-4061604
Length = 528
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = -3
Query: 232 KRPLYKILIRQRGSKICI---FSPPARHPSVVDSHAPT 128
+ P+ + +R +C+ SPPA P V+ +H PT
Sbjct: 149 RAPIAPLALRAPAPHLCVPRVLSPPAPTPPVLATHVPT 186
>08_01_1014 - 10262705-10262719,10263545-10264288
Length = 252
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -1
Query: 384 DDH*LSRHGSKAKVCAANFSFQSLGCSTGTELEVHVKLNV 265
DDH +SRHG KA+ N S ++ G ++ +KLN+
Sbjct: 134 DDHLISRHGEKARK-PCNCSDRTAIAELGADM-AQIKLNL 171
>07_01_0205 + 1481380-1481892
Length = 170
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 311 PKDWNEKLAAQTLALEPWRDSQWSSMLGKWDEGSWLQWG 427
P WN+ LAAQ AL+ R Q + G + E W +G
Sbjct: 54 PVAWNDALAAQ--ALQHARYCQTQHIPGPYGENLWWSYG 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,040,670
Number of Sequences: 37544
Number of extensions: 346476
Number of successful extensions: 985
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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