Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021250X
         (537 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36569| Best HMM Match : TSP_1 (HMM E-Value=2.9e-05)                 28   5.6  
SB_19774| Best HMM Match : WWE (HMM E-Value=5.4e-24)                   27   7.3  
SB_7129| Best HMM Match : E-MAP-115 (HMM E-Value=0.066)                27   7.3  

>SB_36569| Best HMM Match : TSP_1 (HMM E-Value=2.9e-05)
          Length = 307

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 95  ILRTDGLSRHTGWSMAINNRWMACWRTE-DTNFRA 196
           ILR D ++R T    A+   W+ C+  + DT+F A
Sbjct: 190 ILRYDAIARDTSTGYAVPAGWLLCYIDQRDTSFHA 224


>SB_19774| Best HMM Match : WWE (HMM E-Value=5.4e-24)
          Length = 729

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 374 QWSSMLGKWDEGSWLQWGTVQGRFQSFTAEGALDT 478
           QW    G W   SW+    ++  FQS   E +L T
Sbjct: 97  QWRDDRGTWHSYSWIDCKIIEAAFQSGEDELSLST 131


>SB_7129| Best HMM Match : E-MAP-115 (HMM E-Value=0.066)
          Length = 432

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/70 (22%), Positives = 33/70 (47%)
 Frame = +2

Query: 215 FVQRSFKKNYRQCSQHVTFNLTWTSSSVPVEHPKDWNEKLAAQTLALEPWRDSQWSSMLG 394
           +  R  K+N R+   H +F  T   ++V     ++WNE +  + +  +P    QW++ + 
Sbjct: 188 YANRGVKRNARKT--HFSFKST-AMTAVDSFTTRNWNEIIVFRVIPQQPIEKFQWAARVV 244

Query: 395 KWDEGSWLQW 424
                S ++W
Sbjct: 245 HVLVSSCMRW 254


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,461,797
Number of Sequences: 59808
Number of extensions: 404743
Number of successful extensions: 951
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)