Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021250X
         (537 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g34300.1 68414.m04256 lectin protein kinase family protein co...    29   1.5  
At5g62260.1 68418.m07817 AT hook motif-containing protein contai...    29   2.0  
At5g32621.1 68418.m03884 expressed protein contains Pfam profile...    29   2.6  
At1g34170.1 68414.m04238 transcriptional factor B3 family protei...    29   2.6  
At1g59750.2 68414.m06728 auxin-responsive factor (ARF1) identica...    28   4.5  
At1g59750.1 68414.m06727 auxin-responsive factor (ARF1) identica...    28   4.5  
At5g24810.1 68418.m02930 ABC1 family protein contains Pfam domai...    27   7.9  
At1g77850.1 68414.m09072 transcriptional factor B3 family protei...    27   7.9  

>At1g34300.1 68414.m04256 lectin protein kinase family protein
           contains Pfam domains, PF01453: Lectin (probable mannose
           binding) and PF00069: Protein kinase domain
          Length = 829

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 5/108 (4%)
 Frame = +2

Query: 50  THG*NNCVYKIKRRHILRTDGLSRHTGWSMAINNRWMACWRTEDTNFRAPLSNENFVQRS 229
           T+G    V+  K   +  T G    TG  + +NNR +  W + D      + ++NF    
Sbjct: 97  TNGSGTTVWDSKTDRLGVTSGSIEDTGEFILLNNRSVPVWSSFDNPTDTIVQSQNFTAGK 156

Query: 230 FKKN--YR-QCSQHVTFNLTWTSSSVPVEH--PKDWNEKLAAQTLALE 358
             ++  Y  Q  +     L W +S++   H     ++  L++  L+L+
Sbjct: 157 ILRSGLYSFQLERSGNLTLRWNTSAIYWNHGLNSSFSSNLSSPRLSLQ 204


>At5g62260.1 68418.m07817 AT hook motif-containing protein contains
           Pfam PF03479: Domain of unknown function (DUF296);
           contains Pfam PF02178: AT hook motif; similar to AT-Hook
           DNA-Binding Protein SAP1 protein (GI:4165183)
           [Antirrhinum majus]; similar to AT-hook protein 2,
           Arabidopsis thaliana, EMBL:ATAJ4119
          Length = 441

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = +2

Query: 266 TFNLTWTSSSVPVEHPKDWNE-KLAAQTLALEPWRDSQ----WSSMLGKWDEGSWLQWGT 430
           T + T  SSS+P+     W   K   Q   LE  + S      S  +GKWD+ +W+  GT
Sbjct: 99  TLSPTPISSSIPLSGDYQWKRGKAQQQHQPLEFVKKSHKFEYGSPDVGKWDQHNWILLGT 158

Query: 431 V 433
           +
Sbjct: 159 L 159


>At5g32621.1 68418.m03884 expressed protein contains Pfam profile
           PF04827: Protein of unknown function (DUF635)
          Length = 625

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 141 AMLQPVCRDNPSVRKMCRLLILYTQLFQ 58
           A L P+CRD PS      LL  + +LFQ
Sbjct: 597 AWLDPICRDRPSGPLRTSLLATWFELFQ 624


>At1g34170.1 68414.m04238 transcriptional factor B3 family protein
           contains Pfam profile: PF02362 B3 DNA binding domain;
           contains non-consensus GA donor splice site at intron 12
          Length = 623

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
 Frame = +2

Query: 314 KDWNEKLAAQTLA----LEP-WRDSQWSSMLGKWDE 406
           KD++EK    T+     + P W+DS+W S+  +WDE
Sbjct: 303 KDFSEKRYDGTIIGVNDMSPHWKDSEWRSLKVQWDE 338


>At1g59750.2 68414.m06728 auxin-responsive factor (ARF1) identical
           to auxin response factor 1 GI:2245378 from [Arabidopsis
           thaliana]
          Length = 662

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 362 WRDSQWSSMLGKWDEGS 412
           W DS+W S+  +WDE S
Sbjct: 323 WHDSEWRSLKVQWDEPS 339


>At1g59750.1 68414.m06727 auxin-responsive factor (ARF1) identical
           to auxin response factor 1 GI:2245378 from [Arabidopsis
           thaliana]
          Length = 665

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 362 WRDSQWSSMLGKWDEGS 412
           W DS+W S+  +WDE S
Sbjct: 323 WHDSEWRSLKVQWDEPS 339


>At5g24810.1 68418.m02930 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 1009

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = -2

Query: 377 IDYLAMVPKPRFVPLISRSSLWDALREQNSRSTLN*TLHVENI 249
           +DY  +  K +++      +LWD   ++N++  LN  + +E +
Sbjct: 69  LDYKGVQQKEKWIKKSKVPALWDKAHDRNAKRVLNLIVELEGL 111


>At1g77850.1 68414.m09072 transcriptional factor B3 family protein
           similar to auxin response factor 10 GI:6165644 from
           [Arabidopsis thaliana]; contains Pfam profile PF02362:
           B3 DNA binding domain
          Length = 585

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 359 PWRDSQWSSMLGKWDEGSWLQ 421
           PWR S W  +   WDE   LQ
Sbjct: 346 PWRGSPWKQLQITWDEPEILQ 366


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,767,815
Number of Sequences: 28952
Number of extensions: 276670
Number of successful extensions: 715
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)