Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021248
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 100 4e-22
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 63 4e-11
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 56 3e-09
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 48 2e-06
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 44 1e-05
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 44 1e-05
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 44 3e-05
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 43 3e-05
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 42 1e-04
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 41 2e-04
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 38 0.001
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 38 0.001
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 38 0.001
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 38 0.001
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 37 0.002
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 37 0.003
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 36 0.004
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 35 0.012
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 35 0.012
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 33 0.047
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 32 0.062
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 32 0.082
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 31 0.11
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 31 0.11
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 29 0.76
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.1
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 4.1
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 4.1
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 7.1
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 7.1
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 7.1
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.1
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 99.5 bits (237), Expect = 4e-22
Identities = 43/83 (51%), Positives = 57/83 (68%)
Frame = +2
Query: 260 PFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTM 439
PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA FP+YV + VK +
Sbjct: 81 PFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQL 140
Query: 440 GYKEPTPIQAQGWPIAMSGKNLV 508
G++ PTPIQ Q WP+AMSG+++V
Sbjct: 141 GFEAPTPIQQQAWPMAMSGRDMV 163
Score = 72.5 bits (170), Expect = 5e-14
Identities = 35/45 (77%), Positives = 37/45 (82%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
S TGSGKTL+Y LPAIVHIN QP + GDGPI LVLAPTRELA Q
Sbjct: 166 SATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQ 210
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 62.9 bits (146), Expect = 4e-11
Identities = 25/45 (55%), Positives = 37/45 (82%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
++TGSGKT+A++LP HI +Q P++ G+GPIA+++ PTRELA Q
Sbjct: 462 AKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQ 506
Score = 48.4 bits (110), Expect = 9e-07
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVK 433
+ F K+FY + SP EV+E R + + + G++ P+ + + +
Sbjct: 375 EDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVIN 434
Query: 434 TMGYKEPTPIQAQGWPIAMSGKNLV 508
++GY++PT IQAQ P SG++++
Sbjct: 435 SLGYEKPTSIQAQAIPAITSGRDVI 459
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 56.4 bits (130), Expect = 3e-09
Identities = 27/48 (56%), Positives = 36/48 (75%), Gaps = 3/48 (6%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQ 647
++TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQ
Sbjct: 293 AETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQ 340
Score = 44.8 bits (101), Expect = 1e-05
Identities = 17/59 (28%), Positives = 36/59 (61%)
Frame = +2
Query: 332 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLI 290
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 47.6 bits (108), Expect = 2e-06
Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Frame = +3
Query: 507 LRSQTGSGKTLAYILPAIVHINNQPP--IRRGDGPIALVLAPTRELAQQ 647
+ +QTGSGKTLAY+LP + + P R G A+++APTREL QQ
Sbjct: 183 IEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQ 231
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 44.4 bits (100), Expect = 1e-05
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = +3
Query: 510 RSQTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQ 647
+++TGSGKT AY++P + + Q I G AL+L PTRELAQQ
Sbjct: 57 QARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQ 103
Score = 35.1 bits (77), Expect = 0.009
Identities = 14/51 (27%), Positives = 30/51 (58%)
Frame = +2
Query: 359 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 511
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LVA
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVA 56
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 44.4 bits (100), Expect = 1e-05
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Frame = +2
Query: 323 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 493
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 494 GKNLV 508
G+++V
Sbjct: 202 GRDVV 206
Score = 38.7 bits (86), Expect = 7e-04
Identities = 20/45 (44%), Positives = 31/45 (68%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
++TGSGKT+A+ +PA+ ++N + P LV++PTRELA Q
Sbjct: 209 AETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQ 251
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 43.6 bits (98), Expect = 3e-05
Identities = 23/43 (53%), Positives = 28/43 (65%)
Frame = +3
Query: 519 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
TGSGKTLAY+LP + + G G AL++APTRELA Q
Sbjct: 47 TGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQ 87
Score = 34.3 bits (75), Expect = 0.015
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
F+ N +++ V G+K+ TP+QA P+ + K+LV
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLV 42
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 43.2 bits (97), Expect = 3e-05
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +2
Query: 347 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 511
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+A
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMA 211
Score = 29.1 bits (62), Expect = 0.58
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 13/58 (22%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELAQQ 647
+QTGSGKT ++ P + + + P P+ + G P L+LAPTREL Q
Sbjct: 213 AQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQ 270
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 41.5 bits (93), Expect = 1e-04
Identities = 25/46 (54%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQ 647
+QTGSGKT A+ LP I + NN P A+VLAPTRELA Q
Sbjct: 90 AQTGSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRELAYQ 129
Score = 31.9 bits (69), Expect = 0.082
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
F+E D + + + +G+K PTPIQ + P+ ++ ++++
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVI 87
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 40.7 bits (91), Expect = 2e-04
Identities = 23/45 (51%), Positives = 32/45 (71%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
++TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q
Sbjct: 83 AKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQ 126
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 38.3 bits (85), Expect = 0.001
Identities = 22/45 (48%), Positives = 27/45 (60%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
++TGSGKT A+ LP I + P G AL+L PTRELA Q
Sbjct: 51 AKTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELAIQ 90
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 37.9 bits (84), Expect = 0.001
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = +3
Query: 519 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
TGSGKT+AY+ P + + P G A+++APTREL +Q
Sbjct: 92 TGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTRELCEQ 130
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 37.9 bits (84), Expect = 0.001
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +3
Query: 510 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--ALVLAPTRELAQQ 647
++ TGSGKTLA+ +P + H +R D ALV+APTRELA Q
Sbjct: 165 KADTGSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELAHQ 207
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 37.9 bits (84), Expect = 0.001
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
++TGSGKT A+++P I H+ + AL+L+P RELA Q
Sbjct: 113 ARTGSGKTAAFVIPMIEHLKS---TLANSNTRALILSPNRELALQ 154
Score = 28.7 bits (61), Expect = 0.76
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
F+ + + + G+K PTPIQ + P+ + G+++V
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVV 110
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/47 (38%), Positives = 30/47 (63%)
Frame = +3
Query: 507 LRSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
++++TG+GKTLA++L A + P +++L+PTRELA Q
Sbjct: 81 VQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQ 127
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 36.7 bits (81), Expect = 0.003
Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQ 647
++TGSGKTLA+++P I ++ P R G G ++++PTRELA Q
Sbjct: 133 AKTGSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPTRELALQ 176
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 36.3 bits (80), Expect = 0.004
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = +3
Query: 519 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
TGSGKT A+I+P + + +P ++ L+L PTRELA Q
Sbjct: 305 TGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELAMQ 345
Score = 32.7 bits (71), Expect = 0.047
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
F+ N + +G+ +G++ PT IQ + P+A+ GK++V
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIV 300
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 34.7 bits (76), Expect = 0.012
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 511
FE+ + G+ G++ P+PIQ + PIA+SG++++A
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILA 86
Score = 32.7 bits (71), Expect = 0.047
Identities = 16/46 (34%), Positives = 29/46 (63%)
Frame = +3
Query: 510 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
R++ G+GKT A+++P++ ++ + + L+L PTRELA Q
Sbjct: 87 RAKNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLILVPTRELALQ 127
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 34.7 bits (76), Expect = 0.012
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +3
Query: 510 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
+SQ+G+GKT A+ L + ++ P P A+ LAP+RELA+Q
Sbjct: 159 QSQSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELARQ 199
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 32.7 bits (71), Expect = 0.047
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Frame = +3
Query: 519 TGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQ 647
TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q
Sbjct: 182 TGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQ 220
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 32.3 bits (70), Expect = 0.062
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = +2
Query: 323 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 502
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 503 LVA 511
++A
Sbjct: 61 VIA 63
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +3
Query: 510 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
++Q+G+GKT + + + I+ +R AL+L+PTRELA Q
Sbjct: 64 QAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQ 104
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 31.9 bits (69), Expect = 0.082
Identities = 18/46 (39%), Positives = 30/46 (65%)
Frame = +3
Query: 510 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
++Q+G+GKT + + + I+ +++ AL+LAPTRELAQQ
Sbjct: 62 QAQSGTGKTATFSISVLQKIDTS--LKQCQ---ALILAPTRELAQQ 102
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 31.5 bits (68), Expect = 0.11
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 519 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 644
TG GK+L++++PA++ Q P + + LVL P L Q
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQ 1255
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 31.5 bits (68), Expect = 0.11
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 519 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 644
TG GK+L++++PA++ Q P + + LVL P L Q
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQ 1255
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 28.7 bits (61), Expect = 0.76
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -2
Query: 242 PIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPV--TR 69
P S V PS F ++ S +S AT+AK + +S KF + V T
Sbjct: 143 PFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVETE 201
Query: 68 HDYFSDLVEDVYLNYGFFLTQG 3
H+Y+++LV+ ++ F +QG
Sbjct: 202 HEYYTELVKVKEASWPLFNSQG 223
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 451 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 326
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +2
Query: 311 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 442
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 311 PYEVEEYRNKHEVTVS 358
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 635 LSGRRQDQSNRTITSPNRRLVI 570
LSG+R D S RT+ SP+ L I
Sbjct: 350 LSGKRVDFSGRTVISPDPNLRI 371
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -2
Query: 86 IIPVTR-HDYFSDLVEDVYLNYGFFLTQ 6
++PVT+ + D++ED++ NY F +T+
Sbjct: 221 VVPVTQVKNAPDDVLEDLFKNYDFIVTE 248
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 519 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 644
TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 543 TGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -2
Query: 440 PLSLHLVAHNQENL--LLQSIE 381
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,943
Number of Sequences: 5004
Number of extensions: 55774
Number of successful extensions: 209
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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