Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021248
(648 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 101 5e-22
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 93 1e-19
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 93 1e-19
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 75 5e-14
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 75 5e-14
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 75 5e-14
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 73 2e-13
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 71 9e-13
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 71 9e-13
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 66 1e-11
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 58 4e-09
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 55 4e-08
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 52 4e-07
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 48 5e-06
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 46 2e-05
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 46 2e-05
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 46 3e-05
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 45 5e-05
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 45 5e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 44 7e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 44 9e-05
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 44 9e-05
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 44 9e-05
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 44 9e-05
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 43 2e-04
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 43 2e-04
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 43 2e-04
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 42 5e-04
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 40 0.001
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 40 0.001
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 40 0.001
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 40 0.001
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 40 0.001
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 40 0.002
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 40 0.002
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 40 0.002
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 39 0.003
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 39 0.003
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 38 0.004
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 38 0.006
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 38 0.006
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 37 0.010
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 37 0.010
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 37 0.010
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 35 0.054
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 35 0.054
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 33 0.12
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 33 0.12
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 33 0.12
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 33 0.12
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 33 0.16
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 33 0.16
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 33 0.16
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 33 0.16
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 33 0.22
At2g25460.1 68415.m03049 expressed protein 30 1.2
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 28 4.7
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 28 4.7
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 28 4.7
At1g50610.1 68414.m05685 leucine-rich repeat transmembrane prote... 28 4.7
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 4.7
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 4.7
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 28 6.1
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 28 6.1
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 28 6.1
At5g06340.1 68418.m00710 diadenosine 5',5'''-P1,P4-tetraphosphat... 28 6.1
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 28 6.1
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 28 6.1
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 28 6.1
At1g76120.1 68414.m08839 tRNA pseudouridine synthase family prot... 28 6.1
At5g64440.1 68418.m08095 amidase family protein low similarity t... 27 8.1
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 101 bits (241), Expect = 5e-22
Identities = 42/85 (49%), Positives = 57/85 (67%)
Frame = +2
Query: 254 IQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 433
+ PF KNFY P V + EVEEYR E+TV G ++ P++ F + FPDYV + VK
Sbjct: 56 LTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVK 115
Query: 434 TMGYKEPTPIQAQGWPIAMSGKNLV 508
G+ EPTPIQ+QGWP+AM G++L+
Sbjct: 116 KAGFTEPTPIQSQGWPMAMKGRDLI 140
Score = 74.5 bits (175), Expect = 5e-14
Identities = 33/45 (73%), Positives = 39/45 (86%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
++TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA Q
Sbjct: 143 AETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQ 187
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 93.5 bits (222), Expect = 1e-19
Identities = 38/92 (41%), Positives = 61/92 (66%)
Frame = +2
Query: 233 PRLGFCFIQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 412
P+ F + F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 413 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
+ + + +G+ EPTPIQAQGWP+A+ G++L+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLI 206
Score = 69.7 bits (163), Expect = 2e-12
Identities = 30/45 (66%), Positives = 39/45 (86%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
++TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA Q
Sbjct: 209 AETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQ 253
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 93.5 bits (222), Expect = 1e-19
Identities = 38/92 (41%), Positives = 61/92 (66%)
Frame = +2
Query: 233 PRLGFCFIQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 412
P+ F + F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 413 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
+ + + +G+ EPTPIQAQGWP+A+ G++L+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLI 206
Score = 69.7 bits (163), Expect = 2e-12
Identities = 30/45 (66%), Positives = 39/45 (86%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
++TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA Q
Sbjct: 209 AETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQ 253
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 74.5 bits (175), Expect = 5e-14
Identities = 34/76 (44%), Positives = 46/76 (60%)
Frame = +2
Query: 284 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 463
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 464 QAQGWPIAMSGKNLVA 511
QAQ WPIAM G+++VA
Sbjct: 185 QAQSWPIAMQGRDIVA 200
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/45 (51%), Positives = 30/45 (66%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
++TGSGKTL Y++P +H+ R GP LVL+PTRELA Q
Sbjct: 202 AKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELATQ 245
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 74.5 bits (175), Expect = 5e-14
Identities = 34/76 (44%), Positives = 46/76 (60%)
Frame = +2
Query: 284 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 463
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 464 QAQGWPIAMSGKNLVA 511
QAQ WPIAM G+++VA
Sbjct: 185 QAQSWPIAMQGRDIVA 200
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/45 (51%), Positives = 30/45 (66%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
++TGSGKTL Y++P +H+ R GP LVL+PTRELA Q
Sbjct: 202 AKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELATQ 245
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 74.5 bits (175), Expect = 5e-14
Identities = 34/76 (44%), Positives = 46/76 (60%)
Frame = +2
Query: 284 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 463
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 464 QAQGWPIAMSGKNLVA 511
QAQ WPIAM G+++VA
Sbjct: 185 QAQSWPIAMQGRDIVA 200
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/45 (51%), Positives = 30/45 (66%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
++TGSGKTL Y++P +H+ R GP LVL+PTRELA Q
Sbjct: 202 AKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELATQ 245
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 72.9 bits (171), Expect = 2e-13
Identities = 28/84 (33%), Positives = 50/84 (59%)
Frame = +2
Query: 257 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 436
+P NK+FY+ ++ + E +YR + + VSG +VH P++ FE+ F + +K
Sbjct: 186 EPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKK 245
Query: 437 MGYKEPTPIQAQGWPIAMSGKNLV 508
Y++PT IQ Q PI +SG++++
Sbjct: 246 QAYEKPTAIQCQALPIVLSGRDVI 269
Score = 64.5 bits (150), Expect = 6e-11
Identities = 27/45 (60%), Positives = 37/45 (82%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
++TGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA Q
Sbjct: 272 AKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQ 316
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 70.5 bits (165), Expect = 9e-13
Identities = 29/45 (64%), Positives = 37/45 (82%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
++TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQ
Sbjct: 440 AKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQ 484
Score = 64.5 bits (150), Expect = 6e-11
Identities = 29/84 (34%), Positives = 47/84 (55%)
Frame = +2
Query: 257 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 436
+PF KNFY + + + V YR + E+ V G +V PIQ++ + + +K
Sbjct: 354 EPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKK 413
Query: 437 MGYKEPTPIQAQGWPIAMSGKNLV 508
+ Y++P PIQAQ PI MSG++ +
Sbjct: 414 LNYEKPMPIQAQALPIIMSGRDCI 437
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 70.5 bits (165), Expect = 9e-13
Identities = 29/45 (64%), Positives = 37/45 (82%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
++TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQ
Sbjct: 573 AKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQ 617
Score = 64.1 bits (149), Expect = 8e-11
Identities = 28/84 (33%), Positives = 47/84 (55%)
Frame = +2
Query: 257 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 436
+PF KNFY + + + EV YR + E+ V G +V PI+++ + + +K
Sbjct: 487 EPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKK 546
Query: 437 MGYKEPTPIQAQGWPIAMSGKNLV 508
+ Y++P PIQ Q PI MSG++ +
Sbjct: 547 LNYEKPMPIQTQALPIIMSGRDCI 570
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 66.5 bits (155), Expect = 1e-11
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Frame = +2
Query: 266 NKNFYDPH----PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 433
NK+ PH P V SP E+ YR +HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 434 TMGYKEPTPIQAQGWPIAMSGKNLVA 511
+ G+ PTPIQAQ WPIA+ +++VA
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVA 477
Score = 47.2 bits (107), Expect = 9e-06
Identities = 23/45 (51%), Positives = 32/45 (71%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
++TGSGKTL Y++PA + + + R +GP L+LAPTRELA Q
Sbjct: 479 AKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQ 522
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 58.4 bits (135), Expect = 4e-09
Identities = 27/89 (30%), Positives = 51/89 (57%)
Frame = +2
Query: 242 GFCFIQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQ 421
G + +P + ++ P V K S +++ R + +TV+G ++ PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 422 QGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
+ +K G PTPIQ QG P+ +SG++++
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGRDMI 138
Score = 51.2 bits (117), Expect = 6e-07
Identities = 25/46 (54%), Positives = 33/46 (71%), Gaps = 3/46 (6%)
Frame = +3
Query: 519 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQ 647
TGSGKTL ++LP I+ + PI G+GPIALV+ P+RELA+Q
Sbjct: 143 TGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQ 188
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/48 (52%), Positives = 36/48 (75%), Gaps = 3/48 (6%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQ 647
++TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQ
Sbjct: 357 AETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQ 404
Score = 39.1 bits (87), Expect = 0.002
Identities = 14/60 (23%), Positives = 33/60 (55%)
Frame = +2
Query: 329 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
+R ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 51.6 bits (118), Expect = 4e-07
Identities = 25/89 (28%), Positives = 48/89 (53%)
Frame = +2
Query: 242 GFCFIQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQ 421
G + +P + P + K S + + R + + V+G ++ PI+ F++ FP V
Sbjct: 100 GITYTEPLLTG-WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVL 158
Query: 422 QGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
+K G +PTPIQ QG P+ ++G++++
Sbjct: 159 DTLKEKGIVQPTPIQVQGLPVILAGRDMI 187
Score = 48.0 bits (109), Expect = 5e-06
Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
Frame = +3
Query: 519 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQ 647
TGSGKTL ++LP I+ + PI G+GPI L++ P+RELA+Q
Sbjct: 192 TGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQ 237
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 48.0 bits (109), Expect = 5e-06
Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = +3
Query: 507 LRSQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQ 647
+ + TG+GKT+AY+ P I H+ + P + R G ALV+ PTREL Q
Sbjct: 72 VNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQ 119
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +2
Query: 437 MGYKEPTPIQAQGWPIAMSGKN-LVA*PNG 523
MG++ PT +QAQ P+ +SG++ LV P G
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTG 77
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/45 (51%), Positives = 30/45 (66%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
++TGSGKTL Y++P +H+ R GP LVL+PTRELA Q
Sbjct: 273 AKTGSGKTLGYLIPGFMHLQRIHNDSR-MGPTILVLSPTRELATQ 316
Score = 39.1 bits (87), Expect = 0.002
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +2
Query: 428 VKTMGYKEPTPIQAQGWPIAMSGKNLVA 511
V + G+ P+PIQAQ WPIAM +++VA
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVA 271
Score = 33.1 bits (72), Expect = 0.16
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 323 EEYRNKHEVTVSGVEVHNPIQYFEEANFPD 412
E Y KHE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/47 (53%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Frame = +3
Query: 510 RSQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQ 647
R++TG+GKTLA+ +P I I RG P+ LVLAPTRELA+Q
Sbjct: 147 RARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQ 193
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Frame = +3
Query: 510 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 647
+++TG+GKT+A++LPAI + PP R I LV+ PTRELA Q
Sbjct: 425 KAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQ 473
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 44.8 bits (101), Expect = 5e-05
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Frame = +3
Query: 510 RSQTGSGKTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQ 647
R++TG GKTLA++LP + + N P + G P LVL PTRELA+Q
Sbjct: 139 RARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQ 189
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +2
Query: 350 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 511
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L A
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCA 209
Score = 37.1 bits (82), Expect = 0.010
Identities = 25/57 (43%), Positives = 31/57 (54%)
Frame = +3
Query: 477 GR*LCLERI*LRSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
GR LC I TGSGKT A+ LP + + +P +R L+L PTRELA Q
Sbjct: 204 GRDLCASAI-----TGSGKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQ 253
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 44.4 bits (100), Expect = 7e-05
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Frame = +2
Query: 332 RNKHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 499
R ++ + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 500 NLVA 511
A
Sbjct: 180 ECFA 183
Score = 36.7 bits (81), Expect = 0.013
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +3
Query: 519 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 187 TGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Frame = +3
Query: 510 RSQTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQ 647
R++TGSGKTLAY+LP + + + + ++ P A +L P+REL QQ
Sbjct: 89 RAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQ 135
Score = 35.5 bits (78), Expect = 0.031
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = +2
Query: 317 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 496
EVEE RN E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 497 KNLVA 511
K++VA
Sbjct: 84 KDVVA 88
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 44.0 bits (99), Expect = 9e-05
Identities = 25/47 (53%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = +3
Query: 510 RSQTGSGKTLAYILPAIVHINN-QPPIRRGDGPIALVLAPTRELAQQ 647
R++TG+GKTLA+ +P I I RG P LVLAPTRELA+Q
Sbjct: 159 RARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQ 205
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 44.0 bits (99), Expect = 9e-05
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 308 SPYEVEEYRNKHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 481
S ++ + R K ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 482 IAMSGKNLVA 511
A++GK+L+A
Sbjct: 143 AALTGKSLLA 152
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQ 647
+ TGSGKT ++++P I +++ P + P+A+VLAPTREL Q
Sbjct: 154 ADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQ 201
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 44.0 bits (99), Expect = 9e-05
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQ 647
++TGSGKTLA+ +PAI+H+ I G P LVL+PTRELA Q
Sbjct: 158 AKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQ 206
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +2
Query: 317 EVEEYRNKHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 490
E E + K VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 491 SGKNLV 508
G++L+
Sbjct: 150 DGRDLI 155
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/49 (46%), Positives = 34/49 (69%), Gaps = 3/49 (6%)
Frame = +3
Query: 510 RSQTGSGKTLAYILPAIVHINNQPPIRRGD--GPI-ALVLAPTRELAQQ 647
+++TG+GKT+A++LP+I + PP + PI ALV+ PTRELA Q
Sbjct: 97 KAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQ 145
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/49 (44%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Frame = +3
Query: 510 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 647
+++TG+GKT+A++LP+I + PP R + I LV+ PTRELA Q
Sbjct: 123 KAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQ 647
+QTGSGKT A+ P I I ++R G P+A++L+PTRELA Q
Sbjct: 203 AQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQ 252
Score = 40.7 bits (91), Expect = 8e-04
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +2
Query: 254 IQPFNKNFYDPHPTVLKRSPYEVE-EYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 430
+ PF + +P P ++ + + + SG V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 431 KTMGYKEPTPIQAQGWPIAMSGKNLVA 511
+ Y +PTP+Q PI + G++L+A
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGRDLMA 201
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 41.5 bits (93), Expect = 5e-04
Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQ 647
+QTGSGKT A+ P I I I R G P+A++L+PTRELA Q
Sbjct: 190 AQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQ 239
Score = 37.5 bits (83), Expect = 0.008
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +2
Query: 260 PF-NKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 436
PF N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 437 MGYKEPTPIQAQGWPIAMSGKNLVA 511
Y +PTP+Q PI +G++L+A
Sbjct: 164 CKYVKPTPVQRNAIPILAAGRDLMA 188
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Frame = +3
Query: 510 RSQTGSGKTLAYILPAIVHINNQP----PIRR-GDGPIALVLAPTRELAQQ 647
R++TG+GKTLA+ +P I + + RR G P LVLAPTRELA+Q
Sbjct: 145 RAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQ 195
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Frame = +3
Query: 507 LRSQTGSGKTLAYILPAIVHINNQPPIRRGD-----GPIALVLAPTRELAQQ 647
L S TGSGKTLAY+LP IV + + G P +VL PTREL++Q
Sbjct: 154 LGSHTGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQ 204
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQ 647
+QTGSGKT A+ P I I + R G P A++L+PTRELA Q
Sbjct: 195 AQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQ 244
Score = 36.3 bits (80), Expect = 0.018
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 347 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 511
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQ 647
+QTGSGKT A+ P I I + R G P A++L+PTRELA Q
Sbjct: 195 AQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQ 244
Score = 36.3 bits (80), Expect = 0.018
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 347 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 511
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/45 (44%), Positives = 32/45 (71%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
++TGSGKT A+++P + + P +G G AL+L+PTR+LA+Q
Sbjct: 72 ARTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQ 113
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 511
FE N V +K GYK PTPIQ + P+ +SG ++VA
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVA 70
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/54 (38%), Positives = 34/54 (62%)
Frame = +3
Query: 486 LCLERI*LRSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
LC I ++TGSGKTLA+++P + ++ + DG ++++PTRELA Q
Sbjct: 106 LCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPTRELAAQ 158
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQ 647
+ TGSGKT ++++P I +++ P + P+A+VLAPTREL Q
Sbjct: 17 ADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQ 64
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/51 (39%), Positives = 34/51 (66%), Gaps = 4/51 (7%)
Frame = +3
Query: 507 LRSQTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQ 647
++++TG+GK++A++LPAI + N+ + + AL+L PTRELA Q
Sbjct: 370 VKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQ 420
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/45 (46%), Positives = 30/45 (66%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
++TGSGKTLA+++PA V + + +G LV+ PTRELA Q
Sbjct: 198 ARTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVLVICPTRELAIQ 241
Score = 31.9 bits (69), Expect = 0.38
Identities = 20/84 (23%), Positives = 37/84 (44%)
Frame = +2
Query: 257 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 436
+P K T K EVE+ + ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 437 MGYKEPTPIQAQGWPIAMSGKNLV 508
MG+ T IQA+ P M G++++
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVL 195
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 38.7 bits (86), Expect = 0.003
Identities = 24/45 (53%), Positives = 29/45 (64%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
+QTGSGKT A+ LP I+H + P G ALV+ PTRELA Q
Sbjct: 102 AQTGSGKTAAFALP-ILHRLAEDPY----GVFALVVTPTRELAFQ 141
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
FE ++ + K +G ++PTP+Q P ++G++++
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVL 99
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAI-VHINNQPPIRRGDGPIALVLAPTRELAQQ 647
++TGSGKTLA+++PA+ + + R G G +V+ PTRELA Q
Sbjct: 133 ARTGSGKTLAFLIPAVELLFKERFSPRNGTG--VIVICPTRELAIQ 176
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Frame = +3
Query: 507 LRSQTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAQQ 647
+ Q+GSGKTLAY++P I + Q + G P +VL PT ELA Q
Sbjct: 416 IADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQ 466
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Frame = +3
Query: 507 LRSQTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQ 647
++++TG+GK++A++LPAI + N+ + + L+L PTRELA Q
Sbjct: 417 VKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQ 467
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 37.1 bits (82), Expect = 0.010
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = +3
Query: 507 LRSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
+ S TGSGKTL+Y LP IV + P+R ALV+ PTR+LA Q
Sbjct: 67 VNSPTGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLALQ 109
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 37.1 bits (82), Expect = 0.010
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Frame = +3
Query: 519 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQ 647
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ Q
Sbjct: 62 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQ 105
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 37.1 bits (82), Expect = 0.010
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Frame = +3
Query: 519 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQ 647
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ Q
Sbjct: 63 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQ 106
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 34.7 bits (76), Expect = 0.054
Identities = 21/47 (44%), Positives = 26/47 (55%)
Frame = +3
Query: 507 LRSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
L +QTGSGKTL Y+L IN Q A+++ PTREL Q
Sbjct: 118 LHAQTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRELGMQ 159
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 34.7 bits (76), Expect = 0.054
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +2
Query: 377 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 511
PI+ F++ D V +GV GYK+P+ IQ + + G++++A
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIA 64
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +2
Query: 365 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVI 50
Score = 33.1 bits (72), Expect = 0.16
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 7/52 (13%)
Frame = +3
Query: 513 SQTGSGKTLAYILPAIVHI-----NNQPPIRRGDGP--IALVLAPTRELAQQ 647
+QTGSGKT A+ +P + + +++P R P A VL+PTRELA Q
Sbjct: 53 AQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQ 104
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 511
FE+ + G+ G++ P+PIQ + PIA++G++++A
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA 173
Score = 31.9 bits (69), Expect = 0.38
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +3
Query: 510 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
R++ G+GKT A+ +P + I+ + + A+++ PTRELA Q
Sbjct: 174 RAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQ 214
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 511
FE+ + G+ G++ P+PIQ + PIA++G++++A
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA 173
Score = 31.9 bits (69), Expect = 0.38
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +3
Query: 510 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
R++ G+GKT A+ +P + I+ + + A+++ PTRELA Q
Sbjct: 174 RAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQ 214
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 33.5 bits (73), Expect = 0.12
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Frame = +3
Query: 507 LRSQTGSGKTLAYILPAIVHINNQPPIRRGDGP--------IALVLAPTRELAQQ 647
++S TGSGKTLAY+LP + I R A+++AP+REL Q
Sbjct: 152 IQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQ 206
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
FEE PD + ++ G+ PT +Q+ P + G + V
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAV 151
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Frame = +3
Query: 519 TGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAQQ 647
TGSGKTLA+++P + + PP + + ++++PTREL+ Q
Sbjct: 62 TGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQ 105
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/41 (31%), Positives = 27/41 (65%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 511
FE+ + +G+ G+++P+PIQ + PIA++G +++A
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILA 166
Score = 31.1 bits (67), Expect = 0.66
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +3
Query: 510 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
R++ G+GKT A+ +P + I+ + + A++L PTRELA Q
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQ 207
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/41 (31%), Positives = 27/41 (65%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 511
FE+ + +G+ G+++P+PIQ + PIA++G +++A
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILA 166
Score = 31.1 bits (67), Expect = 0.66
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +3
Query: 510 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
R++ G+GKT A+ +P + I+ + + A++L PTRELA Q
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQ 207
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/41 (31%), Positives = 27/41 (65%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 511
FE+ + +G+ G+++P+PIQ + PIA++G +++A
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILA 196
Score = 31.5 bits (68), Expect = 0.50
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +3
Query: 510 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
R++ G+GKT A+ +P + I+ + + + A++L PTRELA Q
Sbjct: 197 RAKNGTGKTGAFCIPTLEKIDPENNVIQ-----AVILVPTRELALQ 237
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 32.7 bits (71), Expect = 0.22
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +3
Query: 510 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 647
++ GSGKT ++L + ++ P +R P AL + PTRELA Q
Sbjct: 137 QAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQ 177
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -1
Query: 198 SHQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGYY 82
+H S + + + + + E + R+CC++ WN F+ +Y
Sbjct: 63 NHTSSKPIALGSNHVEWEEEFERVCCIVGPWNLSFNVFY 101
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 609 ALVLAPTRELAQQ 647
ALVLAPTRELAQQ
Sbjct: 110 ALVLAPTRELAQQ 122
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 609 ALVLAPTRELAQQ 647
ALVLAPTRELAQQ
Sbjct: 112 ALVLAPTRELAQQ 124
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 609 ALVLAPTRELAQQ 647
ALVLAPTRELAQQ
Sbjct: 110 ALVLAPTRELAQQ 122
>At1g50610.1 68414.m05685 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor-like protein kinase
GB:AAC12254 GI:3015488 from [Lycopersicon esculentum]
Length = 686
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +2
Query: 239 LGFCFIQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 412
L FCF+Q +NF +P+ + +E Y N H+ T + + + + PD
Sbjct: 299 LVFCFVQSRRRNFLSAYPSSAGKE--RIESY-NYHQSTNKNNKPAESVNHTRRGSMPD 353
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 269 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 424
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 269 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 424
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 287
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 510 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQ 647
++++G GKT ++L + I P G + ALVL TRELA Q
Sbjct: 89 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQ 129
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 510 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQ 647
++++G GKT ++L + I P G + ALVL TRELA Q
Sbjct: 6 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQ 46
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 510 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQ 647
++++G GKT ++L + I P G + ALVL TRELA Q
Sbjct: 89 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQ 129
>At5g06340.1 68418.m00710 diadenosine 5',5'''-P1,P4-tetraphosphate
hydrolase, putative similar to diadenosine
5',5'''-P1,P4-tetraphosphate hydrolase from [Lupinus
angustifolius] GI:1888557, [Hordeum vulgare subsp.
vulgare] GI:2564253; contains Pfam profile PF00293:
NUDIX domain
Length = 227
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +2
Query: 428 VKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGLHLASNC 562
+K P P+ ++ + + + P G+R+NVG+ L S C
Sbjct: 30 LKQFSVSSPKPLVVLSVALSSPARTVESPPVGYRKNVGICLVSPC 74
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 278 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 454
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 455 TPIQAQGWPIAMS 493
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 278 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 454
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 455 TPIQAQGWPIAMS 493
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 278 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 454
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 455 TPIQAQGWPIAMS 493
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At1g76120.1 68414.m08839 tRNA pseudouridine synthase family protein
similar to SP|Q9Y606 tRNA pseudouridine synthase A (EC
4.2.1.70) (Uracil hydrolyase) {Homo sapiens}; contains
Pfam profile PF01416: tRNA pseudouridine synthase
Length = 463
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 248 CFIQPFNKNFYDPHPTV-LKRSPYEVEEYRNKH 343
CF +N+NF D H V ++ E E ++ KH
Sbjct: 375 CFFTSYNRNFEDSHEEVSMEAYKEEAEAFKLKH 407
>At5g64440.1 68418.m08095 amidase family protein low similarity to
enantiomerase-selective amidase [Rhodococcus sp.]
GI:152052; contains Pfam profile PF01425: Amidase
Length = 607
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +1
Query: 79 GIIAVETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKNSLEGRT 225
G VE VVP LEE + +I +G T++ EA K S + RT
Sbjct: 423 GCKVVEIVVPELEEMRAAHVISIGSPTLSSLTPYCEAGKNSKLSYDTRT 471
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,492,475
Number of Sequences: 28952
Number of extensions: 285257
Number of successful extensions: 956
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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