Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021247
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...   107   2e-24
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    44   2e-05
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    28   1.4  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    27   2.5  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   3.3  
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar...    26   4.4  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    26   5.8  
SPCC1919.09 |tif6||translation initiation factor eIF6|Schizosacc...    26   5.8  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    26   5.8  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   7.7  

>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score =  107 bits (256), Expect = 2e-24
 Identities = 53/84 (63%), Positives = 62/84 (73%)
 Frame = +1

Query: 4   RSQTDLELLVENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIER 183
           RSQ  LEL  EN GAHLNAYTSREQTV+YA    N VP AV +LADI+ NSS++   +ER
Sbjct: 79  RSQKALELEFENTGAHLNAYTSREQTVYYAHAFKNAVPNAVAVLADILTNSSISASAVER 138

Query: 184 ERGVILREMQDVESNLQEVVFDHL 255
           ER VILRE ++V+    EVVFDHL
Sbjct: 139 ERQVILREQEEVDKMADEVVFDHL 162



 Score = 85.8 bits (203), Expect = 5e-18
 Identities = 42/90 (46%), Positives = 61/90 (67%), Gaps = 5/90 (5%)
 Frame = +3

Query: 255 HATAFQGTPLGQTILGPTKNIKKISKADLQSYIRNHYQPGRIVLSGAGGVEHERLVDLAS 434
           HATA+QG PLG+TILGP +NI+ +++ DL  YI+++Y+  R+++S AG + HE LV LA 
Sbjct: 163 HATAYQGHPLGRTILGPKENIESLTREDLLQYIKDNYRSDRMIISSAGSISHEELVKLAE 222

Query: 435 KHFSGLKNSACDVEL-----TPCRYTGSEI 509
           K+F  L+ SA  + L        R+ GSEI
Sbjct: 223 KYFGHLEPSAEQLSLGAPRGLKPRFVGSEI 252



 Score = 37.1 bits (82), Expect = 0.002
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +2

Query: 509 RVRDDSMPLAHVAIAVEGAGWTDADNIPLMVANTLI 616
           R RDD  P A++AIAVEG  W   D    +V   +I
Sbjct: 253 RARDDDSPTANIAIAVEGMSWKHPDYFTALVMQAII 288


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = +3

Query: 255 HATAFQGTPLGQTILGPTKNIKKISKADLQSYIRNHYQPGRIVLSGAGGVEHERLVDLAS 434
           H TAFQ   LG  +L     +  I+   ++ Y++  Y+P  + L+ A G+  E   ++  
Sbjct: 186 HVTAFQNNTLGNCLLCTPDKVNGITATSIREYLKYFYRPEHLTLAYA-GIPQEIAKEITK 244

Query: 435 KHFSGLKNSAC-DVELTPCRYTGSEIG 512
           + +  L +S+   +E  P  YTG  +G
Sbjct: 245 ELYGHLPSSSLPPLEAIPSHYTGGFMG 271



 Score = 33.9 bits (74), Expect = 0.022
 Identities = 19/83 (22%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
 Frame = +1

Query: 16  DLELLVENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIERERGV 195
           +++  +EN+G +    TSRE  ++ A    +DV    ++LA+ +    + E ++   R  
Sbjct: 106 EMKAKLENLGGNYMCSTSRESMIYQAAVFNDDVKSMSKLLAETVLAPKIQEDDLVHYRDS 165

Query: 196 ILREMQDVESNLQEVV--FDHLT 258
           I+ E  ++ +    ++  F H+T
Sbjct: 166 IIYENSELWTKPDALLGEFAHVT 188


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 198 NDTAFSFDFGFGEGGILYDISKDLYCYG 115
           N   F  +F  G+ G+ YDI + L  YG
Sbjct: 641 NRNIFHIEFDLGDSGLTYDIGEALGVYG 668


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 41  WVHT*TPTRPGNKQFFTQNASLMTSP 118
           W H  TPT P + Q  T N+SL   P
Sbjct: 361 WNHCATPTIPVSLQVLTPNSSLKVDP 386


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 184 ERGVILREMQDVESNLQEVVFDHL-TQQHSKVPHWVKQFLDLPKILRK 324
           E GV+  EMQ+ +S+  +V+FD + T Q+     +  +    P  LRK
Sbjct: 146 ESGVVYSEMQNTQSSETDVMFDCMRTSQYPVTSGYYYETGGHPSELRK 193


>SPAC4A8.13c |pts1||20S proteasome component beta
           5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 435 YWPDLLTFHVQLHQLQTKQYVQVDSGS 355
           +W  +L    +LHQL+ K+ + V + S
Sbjct: 115 FWETVLGMECRLHQLRNKELISVSAAS 141


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 18/67 (26%), Positives = 34/67 (50%)
 Frame = +1

Query: 157 SLAEPEIERERGVILREMQDVESNLQEVVFDHLTQQHSKVPHWVKQFLDLPKILRKSLRL 336
           S+  P+I R +  +  ++ D+E   Q+ ++DH      K   W++  L+  +I  KS R 
Sbjct: 68  SMEFPDIRRAK--VFCDL-DLEFCAQQEIYDHPKVVVLKNGMWMRHVLEKNQITTKSARQ 124

Query: 337 TYRATLG 357
             ++ LG
Sbjct: 125 FVKSHLG 131


>SPCC1919.09 |tif6||translation initiation factor
           eIF6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 157 SLAEPEIERERGVILREMQDVESNLQEVVFDHLT 258
           +L  P+IERE   I+ ++ DVE   Q V  + LT
Sbjct: 115 ALVHPDIERETEEIIADVLDVEVFRQTVAGNVLT 148


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/59 (27%), Positives = 23/59 (38%)
 Frame = +3

Query: 267 FQGTPLGQTILGPTKNIKKISKADLQSYIRNHYQPGRIVLSGAGGVEHERLVDLASKHF 443
           FQGT  G    G    I  +   +L  + R+HY P    +   G    E  +   S+ F
Sbjct: 213 FQGTAYGFNSGGDPLAIPDLKYEELVKFHRSHYHPSNAKILSYGSFPLEDNLSALSETF 271


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +3

Query: 294 ILGPTKNIKKISKADLQSYIRNHYQPGRIVLSGAGGVEHERLVDLASKHFSGLKNS 461
           +LG    +  +S+    S +   Y+P  I  S  G   HER +D+  + FS  KN+
Sbjct: 490 LLGQKVTVINMSQQTESSDMLGGYKP--INASTLGLPLHERFIDIFEQTFSSKKNA 543


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,630,620
Number of Sequences: 5004
Number of extensions: 51353
Number of successful extensions: 168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)