Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021247
(681 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0138 + 5837813-5838490,5839000-5839164,5839289-5839426,583... 111 5e-25
01_06_0459 + 29538025-29538579,29539190-29539354,29539448-295395... 98 6e-21
01_07_0301 + 42607239-42607277,42607374-42607577,42607669-426079... 51 1e-06
01_06_0648 - 30844289-30844341,30844536-30844648,30845435-308454... 41 8e-04
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948... 37 0.013
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 33 0.21
04_04_0951 + 29614196-29615275 32 0.37
02_02_0138 + 7114949-7115656,7116388-7116435,7116830-7117988,711... 31 1.1
01_01_0383 + 2968154-2968197,2969377-2969731 29 2.6
12_01_1047 + 10765856-10767784 28 6.0
01_05_0552 - 23173106-23173184,23173266-23173411,23173543-231740... 28 6.0
08_02_1426 + 27009720-27010787,27011846-27012517,27012999-270137... 28 7.9
08_02_0101 + 12374476-12376683 28 7.9
08_02_0042 - 11542707-11542730,11542936-11543011,11543316-115434... 28 7.9
06_02_0107 - 11904636-11904699,11904940-11905013,11905671-119058... 28 7.9
03_02_0708 + 10577931-10579511,10579613-10579706,10580694-105808... 28 7.9
01_06_1292 - 36037741-36039306 28 7.9
01_04_0021 - 15151645-15151809,15152184-15152343,15152548-151530... 28 7.9
>03_02_0138 +
5837813-5838490,5839000-5839164,5839289-5839426,
5839496-5839647,5839754-5839862,5840551-5840649,
5840739-5840804,5840891-5840998,5841820-5841906
Length = 533
Score = 111 bits (267), Expect = 5e-25
Identities = 53/84 (63%), Positives = 64/84 (76%)
Frame = +1
Query: 4 RSQTDLELLVENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIER 183
R+ LE +EN+G HLNAYTSREQT +YAK L DVP A+ ILADI+Q+S L E IER
Sbjct: 156 RNAAQLEEEIENIGGHLNAYTSREQTTYYAKVLDKDVPRALNILADILQHSKLEESRIER 215
Query: 184 ERGVILREMQDVESNLQEVVFDHL 255
ER VILREM++VE +EV+FDHL
Sbjct: 216 ERDVILREMEEVEGQYEEVIFDHL 239
Score = 79.4 bits (187), Expect = 2e-15
Identities = 39/89 (43%), Positives = 58/89 (65%), Gaps = 4/89 (4%)
Frame = +3
Query: 255 HATAFQGTPLGQTILGPTKNIKKISKADLQSYIRNHYQPGRIVLSGAGGVEHERLVDLAS 434
HATAFQ T LG+ ILG +N+K I++ DLQ YI HY R+V++ AG V+H+ +V++A+
Sbjct: 240 HATAFQYTSLGRPILGSAENVKSITQEDLQKYIETHYTAPRMVITAAGAVKHDDIVEMAT 299
Query: 435 KHFSGL----KNSACDVELTPCRYTGSEI 509
K F+ L ++ V P +TGSE+
Sbjct: 300 KLFNDLPTDPTTTSMLVSTQPACFTGSEV 328
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +2
Query: 509 RVRDDSMPLAHVAIAVEGAGWTDADNIPLMVANTLI 616
R+ DD MPLA A+A GA W D D+I LMV +++
Sbjct: 329 RIIDDDMPLAQFAVAFNGASWIDPDSIALMVMQSML 364
>01_06_0459 +
29538025-29538579,29539190-29539354,29539448-29539585,
29539685-29539836,29539949-29540057,29540281-29540379,
29541051-29541116,29541208-29541315,29541428-29541553
Length = 505
Score = 97.9 bits (233), Expect = 6e-21
Identities = 43/79 (54%), Positives = 60/79 (75%)
Frame = +1
Query: 19 LELLVENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIERERGVI 198
LE+ +ENMGA LNAYTSREQT ++A DVP+A+++L+DI+Q ++RERGVI
Sbjct: 120 LEVEIENMGARLNAYTSREQTTYFADVQGRDVPIALDVLSDILQYPCFPANALQRERGVI 179
Query: 199 LREMQDVESNLQEVVFDHL 255
LREM++V+ + EV+FDHL
Sbjct: 180 LREMEEVQGMMDEVIFDHL 198
Score = 89.0 bits (211), Expect = 3e-18
Identities = 44/89 (49%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Frame = +3
Query: 255 HATAFQGTPLGQTILGPTKNIKKISKADLQSYIRNHYQPGRIVLSGAGGVEHERLVDLAS 434
HA AFQG PLG TILGP +NIK ISK DL+ YI HY R+V+S AG V H+ +VD
Sbjct: 199 HAAAFQGHPLGDTILGPVENIKSISKKDLEQYITTHYTCPRMVVSAAGAVNHDEVVDQVR 258
Query: 435 KHFSGLKNSACD----VELTPCRYTGSEI 509
+ F+G VE P +TGSE+
Sbjct: 259 EFFTGFSTDPTTVDQLVEANPAIFTGSEV 287
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +2
Query: 509 RVRDDSMPLAHVAIAVEGAGWTDADNIPLMVANTLI 616
RV MPL H AIA +G+ W + +IPLMV +++
Sbjct: 288 RVEQPEMPLTHFAIAFKGSSWANPSSIPLMVIQSIL 323
>01_07_0301 +
42607239-42607277,42607374-42607577,42607669-42607965,
42608055-42608222,42608393-42608560,42608653-42608733,
42608844-42608910,42609326-42609423,42609665-42609737,
42609826-42609896,42610013-42610062,42610145-42610257,
42610341-42610384
Length = 490
Score = 50.8 bits (116), Expect = 1e-06
Identities = 26/84 (30%), Positives = 46/84 (54%)
Frame = +1
Query: 4 RSQTDLELLVENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIER 183
RS + VE G ++ A SREQTV+ + L +P A+E+L D ++N + E+ER
Sbjct: 120 RSHLQIVQDVEATGGNIGASASREQTVYSYETLKAYLPQAIEVLIDCVRNPLFLQDEVER 179
Query: 184 ERGVILREMQDVESNLQEVVFDHL 255
+ E+Q+++ N + + + L
Sbjct: 180 QVAFAREEVQELQKNPERFLQESL 203
>01_06_0648 -
30844289-30844341,30844536-30844648,30845435-30845484,
30845572-30845642,30845725-30845797,30846744-30846841,
30846936-30847002,30847150-30847230,30847312-30847479,
30847563-30847730,30847813-30848109,30848205-30848426,
30849287-30849325
Length = 499
Score = 41.1 bits (92), Expect = 8e-04
Identities = 26/84 (30%), Positives = 42/84 (50%)
Frame = +1
Query: 4 RSQTDLELLVENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIER 183
RS L VE +G +++A SREQ + VP VE+L D ++N + EI+
Sbjct: 126 RSHLRLVREVEAIGGNVSASASREQMCYTYDAFKAYVPEMVEVLIDSVRNPAFFNWEIKE 185
Query: 184 ERGVILREMQDVESNLQEVVFDHL 255
+ I E+ +V N Q ++ + L
Sbjct: 186 QLEKIKAEIAEVSDNPQGLLLEAL 209
>05_06_0132 +
25893241-25893435,25894266-25894487,25894567-25894863,
25894944-25895111,25895201-25895368,25895456-25895536,
25895704-25895770,25895874-25895971,25896587-25896659,
25896753-25896823,25896919-25896968,25897698-25897810,
25898182-25898300,25898629-25898721,25899025-25899051,
25899422-25899823,25900467-25900513,25900612-25900651,
25900733-25900795,25900881-25901018,25901873-25902031,
25902111-25902164,25902324-25902392,25902514-25902643,
25902909-25902949,25903133-25903178,25903200-25903357,
25903560-25903605,25903702-25903853,25904022-25904243
Length = 1202
Score = 37.1 bits (82), Expect = 0.013
Identities = 24/84 (28%), Positives = 41/84 (48%)
Frame = +1
Query: 4 RSQTDLELLVENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIER 183
RS L VE +G ++ A SREQ + L P VE+L D ++N + E E++
Sbjct: 178 RSHLRLVREVEAIGGNVFASASREQMSYTYDALKCYAPEMVEVLIDSVRNPAFLEWEVKE 237
Query: 184 ERGVILREMQDVESNLQEVVFDHL 255
+ I E+ +V + ++ + L
Sbjct: 238 QLQKIKSEISEVSGDPHGLLMEAL 261
>05_05_0348 +
24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 33.1 bits (72), Expect = 0.21
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = +1
Query: 151 NSSLAEPEIERERGVILREMQDVESNLQEVVFDHLTQQHSKVPHWVKQFLDLPKILRKSL 330
NS+ A E+ R R + + +E + Q+ K P V + DL K+ + L
Sbjct: 648 NSAQACVELLRRRNLGIATFMILEKQTHHL---RKLQEKVKTPEGVPRLFDLVKVKDEKL 704
Query: 331 RLTYRATLGTTI 366
+L + ATLG TI
Sbjct: 705 KLAFFATLGNTI 716
>04_04_0951 + 29614196-29615275
Length = 359
Score = 32.3 bits (70), Expect = 0.37
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 131 SLLISYRIPPSPNPKSNENAVSFFAKCKMSKVTFRRLCLITSRNSIPRYPIGS 289
S +++ PP P P+S + + SF + +M V+ R T N+ P Y +G+
Sbjct: 181 SAILAAEQPPPPEPRSRDRSRSF--RVEMGSVSNRSASTATGGNARPTYSLGT 231
>02_02_0138 +
7114949-7115656,7116388-7116435,7116830-7117988,
7118336-7118424,7118697-7118732
Length = 679
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +3
Query: 282 LGQTILGPTKNIKKISKADLQSYIRNHYQPGRIVLSGAGGVEHERLVDLASK 437
L +T GP++ ++ ++ + N +V G GGVE ER ++LASK
Sbjct: 128 LFRTRAGPSEALRLVADMERDGVAGNISTINLLVGMGGGGVEMERCLELASK 179
>01_01_0383 + 2968154-2968197,2969377-2969731
Length = 132
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +1
Query: 310 KILRKSLRLTYRATLGTTINLDVLFCLELVELN 408
KI RKS RL YR GTT D F L + L+
Sbjct: 24 KIKRKSFRLCYRDQYGTTGACDESFLLRMTPLH 56
>12_01_1047 + 10765856-10767784
Length = 642
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 587 IPLMVANTLIWCLGPLSSWW 646
I L V N LIW +G WW
Sbjct: 315 ISLSVCNHLIWLMGKAKKWW 334
>01_05_0552 -
23173106-23173184,23173266-23173411,23173543-23174022,
23174106-23174161,23175538-23175637,23175708-23175765,
23176163-23176278,23176915-23176974,23177297-23177383,
23178250-23178341,23178409-23178587,23178946-23179087,
23179655-23179706,23180241-23180473,23180569-23180745,
23180882-23181044,23181242-23181392,23181493-23181574,
23182193-23182332,23182499-23183013
Length = 1035
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +1
Query: 163 AEPEIERERGVILREM-QDVESNLQEVVFDHLTQQHSKVPHWVKQFLDLPKILRKSLRLT 339
A+ + + E IL+ + +E + EVV D H+K +++ +FL I ++ +
Sbjct: 337 ADKQFDPENYAILKALLMALEKKISEVVIDSKELGHTKPGNYIYEFLSELNITSETSKKL 396
Query: 340 YRATLGTTINLDVLFCLELVE 402
G ++ L+ + LVE
Sbjct: 397 IDTIDGASLLLEEALSVTLVE 417
>08_02_1426 + 27009720-27010787,27011846-27012517,27012999-27013793,
27014914-27014943,27018095-27019987
Length = 1485
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 271 KVPHWVKQFLDLPKILRKSLRLTYRATLGTTINLDVLFCLEL 396
K+P WVK+ +L K+ +S L AT+ L +L L L
Sbjct: 1342 KLPEWVKELENLQKLSLRSTNLEADATMQVLGGLPMLDILRL 1383
>08_02_0101 + 12374476-12376683
Length = 735
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 16 DLELLVENMGA-HLNAYTSREQTVFYAKCLANDVPVAVEILADII 147
D+E L M A +L YT T+ A CLA D+P A + L ++
Sbjct: 59 DMESLASRMPARNLRTYT----TLINAYCLAGDIPAAKQHLTSLL 99
>08_02_0042 -
11542707-11542730,11542936-11543011,11543316-11543425,
11544562-11544747,11545421-11547697
Length = 890
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/62 (24%), Positives = 32/62 (51%)
Frame = +1
Query: 154 SSLAEPEIERERGVILREMQDVESNLQEVVFDHLTQQHSKVPHWVKQFLDLPKILRKSLR 333
+ LA E E G++L+EM+ + + EV+++ L H + H + +++ K ++
Sbjct: 299 NGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVLKKMK 358
Query: 334 LT 339
T
Sbjct: 359 PT 360
>06_02_0107 - 11904636-11904699,11904940-11905013,11905671-11905802,
11910309-11911018,11911110-11911852,11911936-11913753,
11914037-11914338
Length = 1280
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = -3
Query: 583 VSISPTSSLNSYSYMS*RH*IITDPISDPVYLQGVSSTSHAEFFNPLKCLLARSTNLSCS 404
VSI+ +++L S ++ D +DP S T E F LKCLL NL C
Sbjct: 938 VSINGSTNLRILSLLAKVSGSDNDAYNDP------SLTFKKEMFEHLKCLLVDGDNLKCM 991
Query: 403 T 401
T
Sbjct: 992 T 992
>03_02_0708 +
10577931-10579511,10579613-10579706,10580694-10580856,
10581286-10581491,10581854-10582062
Length = 750
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +3
Query: 315 IKKISKADLQSYIRNHYQPGRIVLSGAGGVEHERLVDLASKHFSGLKNSACDVELTPCR 491
+K + + L++Y + + VL+G +ER+++ A + G KNS + P R
Sbjct: 533 VKTVGQYCLENYRIDLFSIISTVLTGGFSRRYERIIEFAVRDLMGGKNSTIQTLINPER 591
>01_06_1292 - 36037741-36039306
Length = 521
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +3
Query: 324 ISKADLQSYIRNHYQPGRIVLSGAGGVEHERLVDLASKHFSGLKNSAC 467
+ K L+SY+ H +PG + R + KH+ GL N C
Sbjct: 184 LGKMQLRSYMNGHSRPGEPQFPFSVDRGFVRSHRMQRKHYRGLSNPQC 231
>01_04_0021 -
15151645-15151809,15152184-15152343,15152548-15153025,
15153243-15153291,15153585-15153734
Length = 333
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 177 DFGFGEGGILYDISKDLYCYGDV 109
DFGFG G I Y + YC DV
Sbjct: 216 DFGFGSGNIPYLLGYRCYCVVDV 238
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,744,374
Number of Sequences: 37544
Number of extensions: 349738
Number of successful extensions: 1100
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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