Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021247
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.)             105   4e-23
SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)       52   6e-07
SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14)         31   0.86 
SB_27958| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  

>SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score =  105 bits (251), Expect = 4e-23
 Identities = 47/86 (54%), Positives = 66/86 (76%), Gaps = 1/86 (1%)
 Frame = +3

Query: 255 HATAFQGTPLGQTILGPTKNIKKISKADLQSYIRNHYQPGRIVLSGAGGVEHERLVDLAS 434
           HATA+QGT LG+TILGP++N+K I++ DL+ YI  HY   R+VL+ AGGV H+ LV LA 
Sbjct: 80  HATAYQGTALGRTILGPSRNVKSITQQDLKDYINKHYSAPRMVLAAAGGVNHDDLVKLAE 139

Query: 435 KHFSGLKNSACDVE-LTPCRYTGSEI 509
            HFSGL+++  + + + PCR++GSEI
Sbjct: 140 NHFSGLRSTYEEQDKVEPCRFSGSEI 165



 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 36/45 (80%), Positives = 42/45 (93%)
 Frame = +1

Query: 121 AVEILADIIQNSSLAEPEIERERGVILREMQDVESNLQEVVFDHL 255
           AV+ILADIIQNS+L E EIERERGVILREMQ+V++ L+EVVFDHL
Sbjct: 35  AVDILADIIQNSTLGEAEIERERGVILREMQEVDTQLEEVVFDHL 79



 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 25/36 (69%), Positives = 28/36 (77%)
 Frame = +2

Query: 509 RVRDDSMPLAHVAIAVEGAGWTDADNIPLMVANTLI 616
           RVRDD MPLAHVA++VEG GWT  D   LMVAN L+
Sbjct: 166 RVRDDDMPLAHVAMSVEGCGWTHPDYFALMVANMLV 201


>SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)
          Length = 888

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 22/61 (36%), Positives = 40/61 (65%)
 Frame = +3

Query: 264 AFQGTPLGQTILGPTKNIKKISKADLQSYIRNHYQPGRIVLSGAGGVEHERLVDLASKHF 443
           A++   LG   L P +N+  I++  +  +++ +YQP R+V++G   V+HE+LV+L  KHF
Sbjct: 616 AYRNNTLGFPKLCPPQNLPVINRETIMEFMKTYYQPDRMVIAGVN-VDHEQLVELTKKHF 674

Query: 444 S 446
           +
Sbjct: 675 T 675



 Score = 36.7 bits (81), Expect = 0.017
 Identities = 15/75 (20%), Positives = 40/75 (53%)
 Frame = +1

Query: 7   SQTDLELLVENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIERE 186
           S  D+   +E +G   +  + R+  V+      + +P+AVE+L++ +    +   E++ +
Sbjct: 475 SHDDIMQELEPVGGMADCTSFRDAIVYGTSSFTSGLPLAVEVLSEAVMRPQITSQEVDEQ 534

Query: 187 RGVILREMQDVESNL 231
           + ++  E++++E  L
Sbjct: 535 KMLVQFELENLEMRL 549


>SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14)
          Length = 593

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +3

Query: 360 HYQPGRIVLSGAGGVEHERLVDLASKHFSGLKNSACDVELTPCRYTGSEIGS 515
           H+   R+ L G G ++H +LVD A    S L +S   V   P +Y G    S
Sbjct: 89  HFVGKRMALVGVG-IDHAQLVDHAKASLSSLPSSGEAVTKDPAKYHGGPSNS 139


>SB_27958| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/55 (20%), Positives = 28/55 (50%)
 Frame = +1

Query: 88  YAKCLANDVPVAVEILADIIQNSSLAEPEIERERGVILREMQDVESNLQEVVFDH 252
           + KC  + +   + +L   +  + LA    +  RG+    +QD+++++Q+ +  H
Sbjct: 306 WLKCHPDQLRTVLPVLLGGLSQADLASASTQALRGICEECVQDLDTDVQQTILTH 360


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,937,359
Number of Sequences: 59808
Number of extensions: 387315
Number of successful extensions: 1015
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)