Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021247
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.67 
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.67 
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.67 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.67 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.67 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.67 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.88 

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = +1

Query: 238 VVFDHLTQQHSKVPHWVKQ-FLD-LPKILRKS---LRLTYRATLG 357
           ++F H T     +P W+K  FL  LP +LR S    ++T +  LG
Sbjct: 279 LIFHHRTPDRYVMPSWIKMLFLQWLPCLLRMSRPGKKITKKTILG 323


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = +1

Query: 238 VVFDHLTQQHSKVPHWVKQ-FLD-LPKILRKS---LRLTYRATLG 357
           ++F H T     +P W+K  FL  LP +LR S    ++T +  LG
Sbjct: 279 LIFHHRTPDRYVMPSWIKMLFLQWLPCLLRMSRPGKKITKKTILG 323


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = +1

Query: 238 VVFDHLTQQHSKVPHWVKQ-FLD-LPKILRKS---LRLTYRATLG 357
           ++F H T     +P W+K  FL  LP +LR S    ++T +  LG
Sbjct: 279 LIFHHRTPDRYVMPSWIKMLFLQWLPCLLRMSRPGKKITKKTILG 323


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = +1

Query: 238 VVFDHLTQQHSKVPHWVKQ-FLD-LPKILRKS---LRLTYRATLG 357
           ++F H T     +P W+K  FL  LP +LR S    ++T +  LG
Sbjct: 279 LIFHHRTPDRYVMPSWIKMLFLQWLPCLLRMSRPGKKITKKTILG 323


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = +1

Query: 238 VVFDHLTQQHSKVPHWVKQ-FLD-LPKILRKS---LRLTYRATLG 357
           ++F H T     +P W+K  FL  LP +LR S    ++T +  LG
Sbjct: 279 LIFHHRTPDRYVMPSWIKMLFLQWLPCLLRMSRPGKKITKKTILG 323


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = +1

Query: 238 VVFDHLTQQHSKVPHWVKQ-FLD-LPKILRKS---LRLTYRATLG 357
           ++F H T     +P W+K  FL  LP +LR S    ++T +  LG
Sbjct: 279 LIFHHRTPDRYVMPSWIKMLFLQWLPCLLRMSRPGKKITKKTILG 323


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 439 CLLARSTNLSCSTPPAPDK 383
           C+L   TN SC +PP   K
Sbjct: 608 CVLKTDTNQSCPSPPVTTK 626


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,767
Number of Sequences: 438
Number of extensions: 3939
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)