Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021247
(681 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02090.2 68416.m00175 mitochondrial processing peptidase beta... 101 6e-22
At3g02090.1 68416.m00174 mitochondrial processing peptidase beta... 101 6e-22
At1g51980.1 68414.m05863 mitochondrial processing peptidase alph... 40 0.002
At3g16480.1 68416.m02103 mitochondrial processing peptidase alph... 37 0.011
At5g42390.1 68418.m05161 metalloendopeptidase identical to chlor... 31 0.71
At5g56730.1 68418.m07080 peptidase M16 family protein / insulina... 31 0.93
At1g71410.1 68414.m08247 protein kinase family protein contains ... 29 2.2
At1g22870.1 68414.m02855 protein kinase family protein contains ... 29 3.8
At3g46610.1 68416.m05060 pentatricopeptide (PPR) repeat-containi... 28 5.0
At1g63550.1 68414.m07184 hypothetical protein low similarity to ... 28 5.0
At1g58602.1 68414.m06655 disease resistance protein (CC-NBS-LRR ... 27 8.7
>At3g02090.2 68416.m00175 mitochondrial processing peptidase beta
subunit, putative similar to mitochondrial processing
peptidase beta subunit, mitochondrial precursor,
Beta-MPP [Human] SWISS-PROT:O75439
Length = 535
Score = 101 bits (241), Expect = 6e-22
Identities = 49/85 (57%), Positives = 62/85 (72%)
Frame = +1
Query: 1 KRSQTDLELLVENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIE 180
+R+ LE +E++G HLNAYTSREQT +YAK L ++V A+++LADI+QNS E I
Sbjct: 153 RRTVRALEEEIEDIGGHLNAYTSREQTTYYAKVLDSNVNQALDVLADILQNSKFEEQRIN 212
Query: 181 RERGVILREMQDVESNLQEVVFDHL 255
RER VILREMQ+VE EVV DHL
Sbjct: 213 RERDVILREMQEVEGQTDEVVLDHL 237
Score = 88.6 bits (210), Expect = 3e-18
Identities = 42/89 (47%), Positives = 59/89 (66%), Gaps = 4/89 (4%)
Frame = +3
Query: 255 HATAFQGTPLGQTILGPTKNIKKISKADLQSYIRNHYQPGRIVLSGAGGVEHERLVDLAS 434
HATAFQ TPLG+TILGP +N+K I++ DLQ+YI+ HY R+V++ AG V+HE +V+
Sbjct: 238 HATAFQYTPLGRTILGPAQNVKSITREDLQNYIKTHYTASRMVIAAAGAVKHEEVVEQVK 297
Query: 435 KHFSGLKNSACD----VELTPCRYTGSEI 509
K F+ L + V P +TGSE+
Sbjct: 298 KLFTKLSSDPTTTSQLVANEPASFTGSEV 326
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +2
Query: 509 RVRDDSMPLAHVAIAVEGAGWTDADNIPLMVANTLI 616
R+ DD +PLA A+A EGA WTD D++ LMV T++
Sbjct: 327 RMIDDDLPLAQFAVAFEGASWTDPDSVALMVMQTML 362
>At3g02090.1 68416.m00174 mitochondrial processing peptidase beta
subunit, putative similar to mitochondrial processing
peptidase beta subunit, mitochondrial precursor,
Beta-MPP [Human] SWISS-PROT:O75439
Length = 531
Score = 101 bits (241), Expect = 6e-22
Identities = 49/85 (57%), Positives = 62/85 (72%)
Frame = +1
Query: 1 KRSQTDLELLVENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIE 180
+R+ LE +E++G HLNAYTSREQT +YAK L ++V A+++LADI+QNS E I
Sbjct: 153 RRTVRALEEEIEDIGGHLNAYTSREQTTYYAKVLDSNVNQALDVLADILQNSKFEEQRIN 212
Query: 181 RERGVILREMQDVESNLQEVVFDHL 255
RER VILREMQ+VE EVV DHL
Sbjct: 213 RERDVILREMQEVEGQTDEVVLDHL 237
Score = 88.6 bits (210), Expect = 3e-18
Identities = 42/89 (47%), Positives = 59/89 (66%), Gaps = 4/89 (4%)
Frame = +3
Query: 255 HATAFQGTPLGQTILGPTKNIKKISKADLQSYIRNHYQPGRIVLSGAGGVEHERLVDLAS 434
HATAFQ TPLG+TILGP +N+K I++ DLQ+YI+ HY R+V++ AG V+HE +V+
Sbjct: 238 HATAFQYTPLGRTILGPAQNVKSITREDLQNYIKTHYTASRMVIAAAGAVKHEEVVEQVK 297
Query: 435 KHFSGLKNSACD----VELTPCRYTGSEI 509
K F+ L + V P +TGSE+
Sbjct: 298 KLFTKLSSDPTTTSQLVANEPASFTGSEV 326
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +2
Query: 509 RVRDDSMPLAHVAIAVEGAGWTDADNIPLMVANTLI 616
R+ DD +PLA A+A EGA WTD D++ LMV T++
Sbjct: 327 RMIDDDLPLAQFAVAFEGASWTDPDSVALMVMQTML 362
>At1g51980.1 68414.m05863 mitochondrial processing peptidase alpha
subunit, putative similar to mitochondrial processing
peptidase alpha subunit, mitochondrial precursor,
Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
[Potato] SWISS-PROT:P29677
Length = 503
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/83 (28%), Positives = 42/83 (50%)
Frame = +3
Query: 210 ARCRK*PSGGCV*SPHATAFQGTPLGQTILGPTKNIKKISKADLQSYIRNHYQPGRIVLS 389
A K P G + + H+ + G PL + P + +++ L+ ++ ++ R+VL+
Sbjct: 203 AELAKNPMGFLLEAIHSAGYSG-PLASPLYAPESALDRLNGELLEEFMTENFTAARMVLA 261
Query: 390 GAGGVEHERLVDLASKHFSGLKN 458
A GVEHE L+ +A S L N
Sbjct: 262 -ASGVEHEELLKVAEPLTSDLPN 283
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = +1
Query: 31 VENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIERERGVILREM 210
+E +G + +A SREQ + L VP VE+L D ++N + + E+ E + E+
Sbjct: 143 IEAIGGNTSASASREQMSYTIDALKTYVPEMVEVLIDSVRNPAFLDWEVNEELRKMKVEI 202
Query: 211 QDVESN 228
++ N
Sbjct: 203 AELAKN 208
>At3g16480.1 68416.m02103 mitochondrial processing peptidase alpha
subunit, putative similar to mitochondrial processing
peptidase alpha subunit, mitochondrial precursor,
Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
[Potato] SWISS-PROT:P29677
Length = 499
Score = 37.1 bits (82), Expect = 0.011
Identities = 22/75 (29%), Positives = 37/75 (49%)
Frame = +1
Query: 4 RSQTDLELLVENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIER 183
RS L +E +G + +A SREQ + L VP VE+L D ++N + + E+
Sbjct: 130 RSHFRLVREIEAIGGNTSASASREQMGYTIDALKTYVPEMVEVLIDSVRNPAFLDWEVNE 189
Query: 184 ERGVILREMQDVESN 228
E + E+ + +N
Sbjct: 190 ELRKVKVEIGEFATN 204
Score = 35.9 bits (79), Expect = 0.025
Identities = 21/77 (27%), Positives = 38/77 (49%)
Frame = +3
Query: 228 PSGGCV*SPHATAFQGTPLGQTILGPTKNIKKISKADLQSYIRNHYQPGRIVLSGAGGVE 407
P G + + H+ + G L + P I ++ L++++ +Y R+VL+ A GV+
Sbjct: 205 PMGFLLEAVHSAGYSGA-LANPLYAPESAITGLTGEVLENFVFENYTASRMVLA-ASGVD 262
Query: 408 HERLVDLASKHFSGLKN 458
HE L+ + S L N
Sbjct: 263 HEELLKVVEPLLSDLPN 279
>At5g42390.1 68418.m05161 metalloendopeptidase identical to
chloroplast processing enzyme metalloendopeptidase
[Arabidopsis thaliana] gi|2827039|gb|AAC39482
Length = 1265
Score = 31.1 bits (67), Expect = 0.71
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Frame = +1
Query: 43 GAHLNAYTSREQTVFY------AKCLANDV-PVAVEILADIIQNSSLAEPEIERERGVIL 201
GA NAYT TVF+ K +D+ P ++ L +I + +E+ER IL
Sbjct: 260 GARSNAYTDFHHTVFHIHSPTHTKDSEDDLFPSVLDALNEIAFHPKFLSSRVEKERRAIL 319
Query: 202 REMQDVESNLQEVVFDHLTQQHSK 273
E+Q + + V L HS+
Sbjct: 320 SELQMMNTIEYRVDCQLLQHLHSE 343
>At5g56730.1 68418.m07080 peptidase M16 family protein / insulinase
family protein contains Pfam domain, PF05193: Peptidase
M16 inactive domain
Length = 956
Score = 30.7 bits (66), Expect = 0.93
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +1
Query: 19 LELLVENMGAHLNAYTSREQTVFYAKCLANDVPV----AVEILADIIQNSSLAEPEIERE 186
LE + G NA T+ ++T+ Y + D P A+ ILA+ +++ ++E+E
Sbjct: 107 LESIGAEFGPCQNAMTTADETI-YELFVPVDKPELLSQAISILAEFSSEIRVSKEDLEKE 165
Query: 187 RGVILRE 207
RG ++ E
Sbjct: 166 RGAVMEE 172
>At1g71410.1 68414.m08247 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 909
Score = 29.5 bits (63), Expect = 2.2
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +1
Query: 136 ADIIQNSSLAEPEIERERGVILREMQDVESNLQEVVFDHLTQQHSKVPHWVKQFLDLPKI 315
AD+I N + +E + ++LR D + +QE V T ++ V + LP++
Sbjct: 449 ADLITNKTDSEHLVSHVLPLLLRAYNDNDVRIQEEVLKRSTSVAKQLDGQVVRQAILPRV 508
Query: 316 LRKSLRLTYRATLGTTINLDVLFCL-ELVE 402
+L+ T A + ++ L CL ELV+
Sbjct: 509 HGLALKTTVAA-----VRVNALLCLAELVQ 533
>At1g22870.1 68414.m02855 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 913
Score = 28.7 bits (61), Expect = 3.8
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +1
Query: 136 ADIIQNSSLAEPEIERERGVILREMQDVESNLQEVVFDHLTQQHSKVPHWVKQFLDLPKI 315
A++I N + AE + ++LR D + +QE V T ++ V + LP++
Sbjct: 449 AELIINKTNAEHLVSHVLPLLLRAYNDNDVRIQEEVLKRSTSVAKQLDGQVVRQAILPRV 508
Query: 316 LRKSLRLTYRATLGTTINLDVLFCL-ELVE 402
+L+ T A + ++ L CL ELV+
Sbjct: 509 HGLALKTTVAA-----VRVNALLCLAELVQ 533
>At3g46610.1 68416.m05060 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 665
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 587 IPLMVANTLIWCLGPLSSWW 646
I L V N LIW +G WW
Sbjct: 379 ISLSVCNHLIWLMGKAKKWW 398
>At1g63550.1 68414.m07184 hypothetical protein low similarity to
receptor-like protein kinase 5 [Arabidopsis thaliana]
GI:13506747; contains Pfam profile: PF01657 Domain of
unknown function DUF26
Length = 299
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 469 SHAEFFNPLKCLLARSTNLSCSTPPAP 389
S+A+ F P KCLL T++ S PP+P
Sbjct: 205 SYAKIFTP-KCLLRFQTSVLLSPPPSP 230
>At1g58602.1 68414.m06655 disease resistance protein (CC-NBS-LRR
class), putative similar to diesease resistance protein
rpp8 [Arabidopsis thaliana] gi|3901294|gb|AAC78631
Length = 1138
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 315 YFW*VQELFDPMGYLGMLLREV 250
Y+W +E+F P Y G ++R+V
Sbjct: 451 YYWAAEEIFQPRHYDGEIIRDV 472
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,928,625
Number of Sequences: 28952
Number of extensions: 275232
Number of successful extensions: 865
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -