Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021246
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973...    30   1.4  
05_06_0111 + 25646878-25647279                                         28   5.6  
01_06_0679 - 31127510-31127722,31129691-31129717,31129877-311302...    28   5.6  
01_01_1011 - 8003080-8004216                                           28   5.6  
08_02_1085 + 24237804-24238403                                         27   9.8  
03_05_0637 - 26312348-26313004,26313507-26313575,26313799-26314071     27   9.8  

>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
            21997494-21997838,21998323-21999240,21999312-21999640,
            21999709-21999832,21999901-22000071,22000188-22001648,
            22002647-22002910,22003866-22004189
          Length = 1831

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -1

Query: 435  RSLIANASLKCIFQNNFVLHPHXLRVSSARNYENPL 328
            +S++ + S +C+++      PH LR+    N++ PL
Sbjct: 895  QSILVSLSSRCVWKETVCQRPHLLRIKYYGNFDKPL 930


>05_06_0111 + 25646878-25647279
          Length = 133

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -1

Query: 516 RIHAAWKCSILTPAPLHRELRRPR-SLGRSLIANASLKCIFQNNFVLHPHXLRVSSARN 343
           R H  W C + + A   R+ R P  ++  ++ A+A+L   F +   L+P     SS R+
Sbjct: 34  RFHGKWVCGLCSEAVKERQKREPALTVDGAVDAHAALCERFNSTVRLNPKLSLASSMRD 92


>01_06_0679 -
           31127510-31127722,31129691-31129717,31129877-31130245,
           31130340-31130396
          Length = 221

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = -1

Query: 519 ARIHAAWKCSILTPAPLHRELRRPR-SLGRSLIANASLKCIFQNNFVLHPHXLRVSSARN 343
           AR      C +   A   R  R P  ++G ++ ++ASL   F     L+P    V S R+
Sbjct: 54  ARFEGRLVCGLCAEAVSERRRREPALTVGEAVESHASLCDRFNRTVRLNPTLSLVRSMRD 113

Query: 342 YENPLSLTRHK 310
                 L+RH+
Sbjct: 114 IARTNCLSRHR 124


>01_01_1011 - 8003080-8004216
          Length = 378

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
 Frame = -2

Query: 515 GSTPP--GSAPS*RQHPCTENCGGRVRLVDRSSRTPL*NASSKTILYSIHTXYVCHQH-A 345
           G  PP  G+     +H C  + GG++R +   SR  +   S   +    H  + C  H  
Sbjct: 266 GCVPPVAGTENDLIKHRCVTSSGGKLRYIQIHSRLGVPIISVWVLADPEHATWDCECHLP 325

Query: 344 ITKIHYH*HVTNLTQRLSCTQIFCHTSHT 258
            ++I     V+ +T++ S      H  HT
Sbjct: 326 FSEIWSRRWVSRITRKKSLMVAAAHPVHT 354


>08_02_1085 + 24237804-24238403
          Length = 199

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = -2

Query: 608 VLTVVCGAIXICEPADI--LAPKNRASRSSCLRGSTPPGSAPS*RQHP 471
           VL   C A+ +   A     APK+ +S +S     T P  APS  + P
Sbjct: 11  VLLAACAAVALAAEAQAPAAAPKSSSSSNSSSGSHTSPSKAPSPSKSP 58


>03_05_0637 - 26312348-26313004,26313507-26313575,26313799-26314071
          Length = 332

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 620 SGCPVLTVVCGAIXICEPADILAPKNRASRSSCLRGSTPPGSAP 489
           SG   L +  GA     P  +  P +RA  +    GSTPP S+P
Sbjct: 157 SGASSLDLAAGATTAAVPLPL--PSSRALAADPDAGSTPPSSSP 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,793,010
Number of Sequences: 37544
Number of extensions: 295004
Number of successful extensions: 755
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)