Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021246
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30362| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_13177| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  

>SB_30362| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
 Frame = -1

Query: 561 HFGS*ESCFEKLLLARIHAAWKCSILTPAPLHRELRRPRSLGRSLIANASLKCIFQN-NF 385
           HFG        L+   +   WK      +P  RELR+      S     +L   F++ N 
Sbjct: 64  HFGEGSELKRYLIKGSVPTIWKPKKTIASPSDRELRQRAKHRHSSFVTNNLSEQFEHLNL 123

Query: 384 VLHPHXLRVSSARNYENPLSL-TRHKFNATAKLY--ANLLSH 268
           V   H  ++   ++  N + + T  K+ A  K++  A LL+H
Sbjct: 124 VKLDHHEQLVVTKHQNNNIKIPTMWKYLAPLKIFGEAPLLTH 165


>SB_13177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 166 CQTVALVRACGSVISHSFTFKYNMLLSNYLSVCDV*QKICVQLSR-CVK 309
           C+T+A  +AC   IS   T    M+  N LS+  +  KIC  +S+ C K
Sbjct: 53  CRTIA--KACEETISEVDTDLAEMIWQNKLSLSKLTNKICHSMSKACTK 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,433,846
Number of Sequences: 59808
Number of extensions: 344519
Number of successful extensions: 897
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)