Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021245
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    29   0.83 
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    27   1.9  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    27   3.3  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    27   3.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.7  

>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -1

Query: 493 MTRFSPHIDNNTAPFLKKLLAIFRNYRHYY*FT*KLYALESPNHSPLNFVLALIYLGP 320
           +++F      NT P L+KL AIF  + H   +   L  L++ N +  N  + +  +GP
Sbjct: 447 ISQFFRQYGTNTEPMLRKLKAIFITHLHSDHYLGLLNVLQAWNKANTNNSMHINIIGP 504


>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 423 RNIANNFFKKGAVLLSICGLNLVIIWTALTWIYVSATDFLIIISLPLVY 569
           RN+++ + +  AV L    L L   W  + W ++    FLI+  + L+Y
Sbjct: 23  RNVSH-WLQALAVFLHSVSLTLTASWYTVLWAFLPFWPFLIVYLIWLIY 70


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 21/74 (28%), Positives = 32/74 (43%)
 Frame = -3

Query: 425 SKLQTLLLIHIKVICFRITKPFSFKFCTCIDLSRTHITMQFKNTNIILSQSIDF*QSDFH 246
           S   TL L H  ++    +  F F F   +DL  T    +    N ILSQ++ F    F 
Sbjct: 603 SNYDTLSLAHQVLMNESKSANFDFSFLKSLDLQPTITLGKNDLLNAILSQNLWFRSLPFW 662

Query: 245 STIITKHLNSKTKL 204
            ++ T  + S+  L
Sbjct: 663 KSMTTSFMMSQDVL 676


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = -3

Query: 320 HITMQFKNTNIILSQSIDF*QSDFHSTIITKHLNSKTKLQVTKQSFS 180
           H+T  F + N+I+ QS+   + +   T++    N     +V +++ S
Sbjct: 246 HLTSNFTDANLIIKQSVVLARIESTFTVLPSDYNDSAAQRVPRKTIS 292


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 319  WVLDKSMQVQNLKENGLVILKHITF 393
            W+++  + V  +KE   ++LK +TF
Sbjct: 2215 WIMNSPVPVPTVKEKAALLLKMVTF 2239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,759,986
Number of Sequences: 5004
Number of extensions: 56439
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)