Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021245
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98...    30   1.5  
09_02_0563 - 10693152-10693589,10693789-10693951,10694090-10694337     28   7.9  
06_03_0668 + 23301578-23301791,23302102-23302199,23302233-233023...    28   7.9  

>02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-989673,
            990244-990510,990840-992458,992571-993327,993560-995506
          Length = 1727

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = -3

Query: 605  RRITS-RFQFC-NLVYQWK*NYNKKISCRHINPSKC 504
            + ITS R + C NL+Y W   +++ I+ +H++ SKC
Sbjct: 1204 KSITSMRLENCPNLIYNWSEAFSQLIALKHLDISKC 1239


>09_02_0563 - 10693152-10693589,10693789-10693951,10694090-10694337
          Length = 282

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
 Frame = +1

Query: 592 DVILRNTMY------DINVLTK*MSTLKKKGFLSCI 681
           D+I+RN +Y      D+  ++    T +KKGF SC+
Sbjct: 136 DIIIRNAVYGCRRSVDVGFISSVHKTTRKKGFSSCL 171


>06_03_0668 +
           23301578-23301791,23302102-23302199,23302233-23302301,
           23302674-23302961,23303045-23303208,23303344-23303599,
           23303706-23303816,23304109-23304195,23305916-23305985,
           23306093-23306149,23306309-23306426,23307314-23307403,
           23307492-23307671,23307816-23307893,23308016-23308088
          Length = 650

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/61 (27%), Positives = 32/61 (52%)
 Frame = +1

Query: 214 LLFKCFVIIVE*KSLC*KSIDCDNIMFVFLNCIVIWVLDKSMQVQNLKENGLVILKHITF 393
           +L KC V++    S+  + I  DNI+ V      +  +DKS+ +  L  +  V L++ ++
Sbjct: 101 VLVKCCVLVFVHMSVALEIIGEDNILLVHPEGKYVVDVDKSIDITKLSPSTRVALRNDSY 160

Query: 394 M 396
           M
Sbjct: 161 M 161


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,967,318
Number of Sequences: 37544
Number of extensions: 271491
Number of successful extensions: 463
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)