Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021245
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)                  29   3.5  
SB_34240| Best HMM Match : DUF895 (HMM E-Value=4.3e-08)                29   3.5  
SB_43084| Best HMM Match : ig (HMM E-Value=9.7e-23)                    29   4.6  

>SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)
          Length = 874

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = -1

Query: 190 KVLVITCIFQ--LRLTNNYSN*IEEVKKFQDLV*KTILYPGNIKILVSYKNINTLKNFTL 17
           K L+ TC     +R+ N  +  +E  K+FQ+      L+P  + ILV + +   L N  +
Sbjct: 163 KPLIATCSLDRSVRIWNYETCSLEAYKEFQEECYSIALHPSGLYILVGFSDKLRLMNLLI 222

Query: 16  D 14
           D
Sbjct: 223 D 223


>SB_34240| Best HMM Match : DUF895 (HMM E-Value=4.3e-08)
          Length = 253

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 163 EKYTLLLKLCFVTCNFVLLFKCF 231
           EK++L L + F++C F+ LF  F
Sbjct: 47  EKFSLTLNIFFISCGFLFLFTAF 69


>SB_43084| Best HMM Match : ig (HMM E-Value=9.7e-23)
          Length = 960

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 619 HT*YFEGSHLDSSFATWYTNGSEIIIRK 536
           H+   +G HL +SF  WY +G  +++ K
Sbjct: 410 HSLALDGEHLHASFEGWYHSGPMLVLSK 437


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,965,875
Number of Sequences: 59808
Number of extensions: 364017
Number of successful extensions: 693
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)