Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021245
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49867-2|CAA90028.1|  346|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U51997-2|AAG24069.1|  332|Caenorhabditis elegans Serpentine rece...    28   7.1  
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z49867-2|CAA90028.1|  346|Caenorhabditis elegans Hypothetical
           protein C33D3.4 protein.
          Length = 346

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -3

Query: 419 LQTLLLIHIKVICFRITKPFSFKFCTCIDLSRTHITMQFKNTNII 285
           L+T++ +H+K +  ++   FS  + TCI LS   +T   +N N I
Sbjct: 251 LRTIISMHVKDVNLQVLYHFSVSYSTCIMLSILALTGGKENNNEI 295


>U51997-2|AAG24069.1|  332|Caenorhabditis elegans Serpentine
           receptor, class h protein19 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = -3

Query: 434 GNISKLQTLLLIHIKVICFRITKPFSFKFCTCIDLSRTHITMQFKNTNIILSQSIDF*QS 255
           G I  L T L+++I  +   +T+ F +++ +CI   +TH    F  + + L +++    S
Sbjct: 90  GTIQFLITCLIVNIHTLY--MTEIFYYRYQSCIFNYKTHKFSYFVKSYVYLIRTLIITTS 147

Query: 254 DFHSTII--TKHLNSKTKLQVTKQS 186
            FH         + +  KL   KQ+
Sbjct: 148 IFHFATYQDATKIEAHNKLNALKQN 172


>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical
           protein F54E4.1 protein.
          Length = 2948

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 34  RYLYFYTKQGSLYFQDIK*FFKL 102
           ++++F+ + G LYF +IK  FK+
Sbjct: 5   KFIFFFCRNGFLYFDEIKNRFKI 27


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,841,521
Number of Sequences: 27780
Number of extensions: 307730
Number of successful extensions: 627
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)