Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021245
(685 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 26 0.38
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 3.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 3.6
U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive o... 21 8.3
AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin ... 21 8.3
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 25.8 bits (54), Expect = 0.38
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 467 IYMWTKSGHNLDSTYLDLC 523
+Y W +G + DS LDLC
Sbjct: 482 VYAWIGAGRDSDSRLLDLC 500
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.6
Identities = 6/20 (30%), Positives = 12/20 (60%)
Frame = -1
Query: 607 FEGSHLDSSFATWYTNGSEI 548
F+ H D F +W +G+++
Sbjct: 120 FDDQHCDMKFGSWTYDGNQV 139
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.6
Identities = 6/20 (30%), Positives = 12/20 (60%)
Frame = -1
Query: 607 FEGSHLDSSFATWYTNGSEI 548
F+ H D F +W +G+++
Sbjct: 120 FDDQHCDMKFGSWTYDGNQV 139
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.6
Identities = 6/20 (30%), Positives = 12/20 (60%)
Frame = -1
Query: 607 FEGSHLDSSFATWYTNGSEI 548
F+ H D F +W +G+++
Sbjct: 120 FDDQHCDMKFGSWTYDGNQV 139
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.6
Identities = 6/20 (30%), Positives = 12/20 (60%)
Frame = -1
Query: 607 FEGSHLDSSFATWYTNGSEI 548
F+ H D F +W +G+++
Sbjct: 120 FDDQHCDMKFGSWTYDGNQV 139
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.6
Identities = 6/20 (30%), Positives = 12/20 (60%)
Frame = -1
Query: 607 FEGSHLDSSFATWYTNGSEI 548
F+ H D F +W +G+++
Sbjct: 120 FDDQHCDMKFGSWTYDGNQV 139
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.6
Identities = 6/20 (30%), Positives = 12/20 (60%)
Frame = -1
Query: 607 FEGSHLDSSFATWYTNGSEI 548
F+ H D F +W +G+++
Sbjct: 120 FDDQHCDMKFGSWTYDGNQV 139
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 3.6
Identities = 6/20 (30%), Positives = 12/20 (60%)
Frame = -1
Query: 607 FEGSHLDSSFATWYTNGSEI 548
F+ H D F +W +G+++
Sbjct: 188 FDDQHCDMKFGSWTYDGNQV 207
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 3.6
Identities = 6/20 (30%), Positives = 12/20 (60%)
Frame = -1
Query: 607 FEGSHLDSSFATWYTNGSEI 548
F+ H D F +W +G+++
Sbjct: 188 FDDQHCDMKFGSWTYDGNQV 207
>U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive
opsin protein.
Length = 377
Score = 21.4 bits (43), Expect = 8.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +1
Query: 286 IMFVFLNCIVIWVLDKSMQVQ 348
IM + NC VIW+ S ++
Sbjct: 69 IMSLVGNCCVIWIFSTSKSLR 89
>AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin
protein.
Length = 377
Score = 21.4 bits (43), Expect = 8.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +1
Query: 286 IMFVFLNCIVIWVLDKSMQVQ 348
IM + NC VIW+ S ++
Sbjct: 69 IMSLVGNCCVIWIFSTSKSLR 89
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,314
Number of Sequences: 438
Number of extensions: 4216
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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