Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021245
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33170.1 68415.m04064 leucine-rich repeat transmembrane prote...    29   2.2  
At2g13900.1 68415.m01542 DC1 domain-containing protein contains ...    27   8.8  

>At2g33170.1 68415.m04064 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor protein kinase
           [Pinus sylvestris] gi|12054894|emb|CAC20842; contains
           leucine rich repeat (LRR) domains, Pfam:PF00560;
           contains protein kinase domain, Pfam:PF00069
          Length = 1124

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 683 HMHDKNPFFFNVDIYFV 633
           ++HDK PFF   DIYFV
Sbjct: 786 YVHDKEPFFQESDIYFV 802


>At2g13900.1 68415.m01542 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 661

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 163 EKYTLLLKLCFVTCNFVLLFKCFVIIVE*K 252
           +K T L KL  + C++V+ FKC  +  E K
Sbjct: 514 QKATFLRKLNCIECDYVICFKCATLPYEAK 543


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,427,871
Number of Sequences: 28952
Number of extensions: 261683
Number of successful extensions: 450
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)