Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021244
(708 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|... 52 1e-07
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz... 28 1.5
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 27 2.6
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P... 27 3.5
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 4.6
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 26 4.6
SPAC823.06 |taf3||transcription factor TFIID complex subunit Taf... 26 6.1
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 26 6.1
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 8.0
>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
3|||Manual
Length = 834
Score = 51.6 bits (118), Expect = 1e-07
Identities = 26/84 (30%), Positives = 47/84 (55%)
Frame = +1
Query: 4 RMTVYEYFMKEKKYRIKYPDLNCLWVGPKDKNIYLPMELVEVAYGQARNKQLNDRQLSTM 183
+++V EYF++ R++YP+L C+ V LP+E V GQ +LN Q + M
Sbjct: 286 KISVAEYFLENHNVRLQYPNLPCILV---KNGAMLPIEFCFVVKGQRYTAKLNSDQTANM 342
Query: 184 VREAATPPDVRKRKIEEVIQKMNY 255
+R A P R ++I++ + +M++
Sbjct: 343 IRFAVQRPFERVQQIDDFVHQMDW 366
Score = 30.7 bits (66), Expect = 0.21
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 267 FFKTYGLEIANEFYQVEAKILEAPTLEVGPRQFTVPKKGVW 389
+ YG++I + +V A++LE P++ G P G W
Sbjct: 371 YLTQYGMKIQKKMLEVPARVLETPSIRYGGDCIERPVSGRW 411
>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
reductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = -1
Query: 423 SELPVSEDSWPAILPSLVQ*IAVDPLLMWALREFSLQLDKTHWLSPSRMF*RIDSSIIHL 244
S +PV + ++P+I + ++V+P + L + +QL+K W + + I L
Sbjct: 136 SLVPVDKSAFPSIAEAAT--LSVNPCTAYCLLQHVVQLNKGDWFIQDGANSMVGIATIQL 193
Query: 243 LNHF 232
HF
Sbjct: 194 AKHF 197
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 360 QFTVPKKGVWQANCLLKPEALNSWGFI 440
Q+ +P++G+ Q+N L E L W I
Sbjct: 502 QYEIPRRGILQSNAFLAQEQLLFWKVI 528
>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -2
Query: 476 FIITSTWIQFYGNEAP*IQSFRFQKTVGLPYSLLWY 369
F T TW + + P +QSFR + +P + +Y
Sbjct: 313 FFATITWDNLWTQDPPPMQSFRPNYNIAIPNAPAYY 348
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/68 (22%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Frame = +1
Query: 85 PKDKNIYLPMELV---EVAYGQARNKQLNDRQLSTMVR--EAATPPDVRKRKIEEVIQKM 249
P ++ +P++ V +++ + + K+L ++ T EA PP+V +RK++ + KM
Sbjct: 960 PDPSSLTIPVDQVAPLQLSANRWQPKKLTEKPAETKGEDEEALLPPEVVQRKVKGSLNKM 1019
Query: 250 NYRRINSL 273
+ + +
Sbjct: 1020 TLEKFDKI 1027
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 26.2 bits (55), Expect = 4.6
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -1
Query: 402 DSWPAILPSLV-Q*IAVDPLLMWALREFSLQLDKTHWLSPSRMF*RIDSSIIHLLNHF 232
+ +P PS+ Q V P + W E + + KTHW SP+ +II LL+++
Sbjct: 62 EGYPISPPSVYFQTKIVHPNISWTNGEVCMDILKTHW-SPAWSLQSACLAIISLLSNY 118
>SPAC823.06 |taf3||transcription factor TFIID complex subunit
Taf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 267 IDSSIIHLLNHFLDLTFPYIR 205
ID + + LLN F D+T YIR
Sbjct: 27 IDRTKVSLLNSFTDITIRYIR 47
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 223 KIEEVIQKMNYRRINSL 273
K+EEV QK+NY +I S+
Sbjct: 160 KVEEVGQKLNYTKITSI 176
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 214 RKRKIEEVIQKMNYRRINSLK 276
RK++++E IQK NY+ +K
Sbjct: 699 RKKQLQEAIQKFNYKPKEGIK 719
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,279,682
Number of Sequences: 5004
Number of extensions: 73770
Number of successful extensions: 177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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