Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021244
(708 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37230| Best HMM Match : PAZ (HMM E-Value=0.035) 56 2e-08
SB_45827| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_9279| Best HMM Match : Piwi (HMM E-Value=0) 33 0.23
SB_41291| Best HMM Match : Piwi (HMM E-Value=0) 32 0.40
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) 30 2.1
SB_45173| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_44069| Best HMM Match : Rad21_Rec8 (HMM E-Value=0.0016) 28 6.5
SB_9533| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_38167| Best HMM Match : Collagen (HMM E-Value=7e-12) 28 8.5
SB_16092| Best HMM Match : FixQ (HMM E-Value=2.5) 28 8.5
>SB_37230| Best HMM Match : PAZ (HMM E-Value=0.035)
Length = 167
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/67 (38%), Positives = 40/67 (59%)
Frame = +1
Query: 55 YPDLNCLWVGPKDKNIYLPMELVEVAYGQARNKQLNDRQLSTMVREAATPPDVRKRKIEE 234
YP L CL VG + ++ YLP+E+ + GQ K+L D Q S M+R A R+R+I
Sbjct: 2 YPHLPCLQVGQEQRHTYLPLEVCNIVPGQRCVKKLTDTQTSKMIRATARSAPDREREIRG 61
Query: 235 VIQKMNY 255
+++K N+
Sbjct: 62 LVKKANF 68
>SB_45827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2047
Score = 33.1 bits (72), Expect = 0.23
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = -3
Query: 667 LFQLVIIIAAPSRNDHDQEIDLFF*SVQHTLVQVIYTDVEASHLWLGHVHAHLRPVFISF 488
L LV ++ PS + HDQEI + +++ Q + EA L L VH R +
Sbjct: 910 LHDLVHMVYRPSTDQHDQEIQIVCNAIEK---QARIREAEAETLDLATVHVAYRHIQRRL 966
Query: 487 DTMSS*LH 464
D +S LH
Sbjct: 967 DNLSELLH 974
>SB_9279| Best HMM Match : Piwi (HMM E-Value=0)
Length = 941
Score = 33.1 bits (72), Expect = 0.23
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Frame = +2
Query: 512 MGMNVTQPKMACFNIRINDLHKSMLHALEKQV-----NFLVVVVSGRGRDYYHKLKQIAE 676
MG+N T+P+M N +D S L AL ++ +V +V +D Y +K++
Sbjct: 440 MGINTTKPRMVPLN---DDRTDSYLKALSNEIQADFPQIVVTIVPSNRKDRYDSIKKLCC 496
Query: 677 LKVGILTQCI 706
L+ G+ +Q +
Sbjct: 497 LEKGVPSQVV 506
>SB_41291| Best HMM Match : Piwi (HMM E-Value=0)
Length = 598
Score = 32.3 bits (70), Expect = 0.40
Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +2
Query: 599 KQVNFLVVVVSGRG-RDYYHKLKQIAELKVGILTQCI 706
K + +VV + RG +D Y+++K++ + +GI TQC+
Sbjct: 168 KSLQLIVVALPDRGNKDVYNEVKRVGDTVLGIPTQCV 204
>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
Length = 2122
Score = 29.9 bits (64), Expect = 2.1
Identities = 23/81 (28%), Positives = 33/81 (40%)
Frame = +1
Query: 16 YEYFMKEKKYRIKYPDLNCLWVGPKDKNIYLPMELVEVAYGQARNKQLNDRQLSTMVREA 195
Y EK Y+ K +L K KNI L +L E A + KQ Q+ +
Sbjct: 274 YHLLDSEKSYKKKITELEFDLKSFKSKNIQLEKDL-ENARNRPSEKQFEVIQVENVQAVE 332
Query: 196 ATPPDVRKRKIEEVIQKMNYR 258
+ P D E +++ NYR
Sbjct: 333 SAPTDDFSAFDSEELERSNYR 353
>SB_45173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 487
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -3
Query: 646 IAAPSRNDHDQEIDLFF*SVQHTLVQVIYTDVEASHLWLGHVHAH 512
+ AP+RN+ + F + H + +I +V H + H+H H
Sbjct: 123 VVAPARNNKWHPLVAFVRRIAHDMTDIILYNVNRHHHYQHHLHHH 167
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -3
Query: 214 VHQVELQPLSPLSTIVCHLIACYGPGHMQLRLVPSVDICSCLSGRPTNSSGPDT 53
+H V L L L +V HL+ H+ +RLV +C+C P+ S P T
Sbjct: 597 IHLVHLAHLVHLVHLV-HLVHLVHQVHL-VRLVHLAHLCTCTLSTPSTPSTPST 648
>SB_44069| Best HMM Match : Rad21_Rec8 (HMM E-Value=0.0016)
Length = 800
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -1
Query: 354 DPLLMWALREFSLQLDKTHWLSPSRMF*RIDSSIIHLLNHFLDLTFPYIRWSCSL 190
DP +FS L +TH S+ ++S IHL +D+ F WS +L
Sbjct: 93 DPRFTKLRNDFSYFLTRTHTCRKSKRI--LESPQIHLYTALVDVFFKPFEWSFNL 145
>SB_9533| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 345 EVGPRQFTVPKKGVWQANCLLKPEALNSWGF 437
++G Q VP V NCLL +L WGF
Sbjct: 143 DMGVCQRLVPLATVGDGNCLLHAASLGMWGF 173
>SB_38167| Best HMM Match : Collagen (HMM E-Value=7e-12)
Length = 299
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = +3
Query: 321 KILEAPTLEVGPRQFTVPKKGVWQANCLL---KPEALNSWGFIAIEL 452
+I AP E+ PR+ V Q NC + P A+ SW I +L
Sbjct: 201 RIRNAPRAEISPRELNVNASASAQLNCSIISGDPNAVVSWKRIGGDL 247
>SB_16092| Best HMM Match : FixQ (HMM E-Value=2.5)
Length = 250
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 225 DRGSDSKDELSKNQFFKTYGLEIANEFYQ 311
+RG D+++ELSK +F +T FYQ
Sbjct: 180 ERGEDNEEELSKEEFARTMEALACWTFYQ 208
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,457,605
Number of Sequences: 59808
Number of extensions: 559456
Number of successful extensions: 1222
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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