Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021243
(555 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 97 1e-21
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 50 3e-07
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 44 2e-05
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 41 1e-04
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 41 1e-04
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 34 0.016
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 32 0.049
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 31 0.15
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 30 0.26
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 29 0.46
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 27 1.4
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi... 26 3.2
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 26 3.2
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 5.7
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 25 5.7
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 25 5.7
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 5.7
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 25 7.5
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 25 7.5
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 9.9
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po... 25 9.9
SPBC1A4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.9
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 97.5 bits (232), Expect = 1e-21
Identities = 43/83 (51%), Positives = 56/83 (67%)
Frame = +1
Query: 259 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVDVHNPIQYFEEANFPDYVQQGV 438
+L PF K+FY H V RS EV EYR E+ V G++V P+ FEEA FP+YV + V
Sbjct: 78 TLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEV 137
Query: 439 KTMGYKEPTPIQAQGWPIAMSGK 507
K +G++ PTPIQ Q WP+AMSG+
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGR 160
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 49.6 bits (113), Expect = 3e-07
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVDVHNPIQYFEEANFPDYVQQ 432
++ + F K+FY + SP EV+E R + + + + G+D P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 433 GVKTMGYKEPTPIQAQGWPIAMSGK 507
+ ++GY++PT IQAQ P SG+
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGR 456
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 44.0 bits (99), Expect = 2e-05
Identities = 17/56 (30%), Positives = 34/56 (60%)
Frame = +1
Query: 340 RNNHEVTVSGVDVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
+ ++ +++ G D+ NP++ +EEA P + + +K + YKEP+ IQ P+ + K
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRK 287
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 40.7 bits (91), Expect = 1e-04
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +1
Query: 355 VTVSGVDVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
V VSG D+ P+ F ++ Q +K GY +PTP+Q PI SG+
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGR 207
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 40.7 bits (91), Expect = 1e-04
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
PI F+E + +++G+K YKEPTPIQA WP ++G+
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGR 203
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 33.9 bits (74), Expect = 0.016
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYS-NGFRQTLA 549
FE+ + G+ G++ P+PIQ + PIA+SG+ LA + NG +T A
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAA 97
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 32.3 bits (70), Expect = 0.049
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +1
Query: 331 EEYRNNHEVTVSGVDVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 480
+E N E+T S DV N + FEE N + + +G+ GY+ P+ +Q++
Sbjct: 3 DEIMENVELTTSE-DV-NAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSR 50
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 30.7 bits (66), Expect = 0.15
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
F+ N +++ V G+K+ TP+QA P+ + K
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNK 39
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 29.9 bits (64), Expect = 0.26
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 501
F+E D + + + +G+K PTPIQ + P+ ++
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLN 82
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 29.1 bits (62), Expect = 0.46
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = +1
Query: 367 GVDVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGK 52
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 27.5 bits (58), Expect = 1.4
Identities = 8/37 (21%), Positives = 22/37 (59%)
Frame = +3
Query: 150 RLDLATVAVDLEDLEDLVGKKNSLEVRTCVAQIGICF 260
+ D++ + + + + +NS+++ +C+ Q+G CF
Sbjct: 274 KFDISLIMALISAIINKTASQNSIKIISCLYQVGFCF 310
>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 26.2 bits (55), Expect = 3.2
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Frame = +1
Query: 226 SEHASPRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEY------RNNHEVTVSGVDVHNP 387
++ A R+G + +Q F + F+D P + + + NH+ V+ V P
Sbjct: 255 TKSAVMRIGLLEMQKFGRMFFDCKPLTMSEESCGIADLITTCLGGRNHKCAVAFVKTGKP 314
Query: 388 IQYFEEANFPDYVQQGVKT 444
+ E+ QG T
Sbjct: 315 MHVVEQELLDGQKLQGAAT 333
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
F+ + + + G+K PTPIQ + P+ + G+
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGR 107
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 5.7
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 468 RRRFFVTHCLY--TLLHIIRKICFFKVLNRIMNINATYSYLVIISV 337
RR T CLY + L +I K C + I+ INA ++L +SV
Sbjct: 524 RRLNIHTTCLYRDSNLQVIIKSCIINSVKSIILINAGLAHLGKVSV 569
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 25.4 bits (53), Expect = 5.7
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = -1
Query: 522 VRQLNLSRHSYRPALSLNRRRFFVT--HCLYTLLHIIRKICFFKVLNRIMNINATYSYLV 349
V +L+ + H +L R FV H L ++ + F K ++ + I SY++
Sbjct: 675 VNRLSTTGHFLAYTANLERDGVFVIADHTLSENPEALKALLFSKDISNLETIQQNCSYVL 734
Query: 348 IISVLFDFIW 319
I+ + +W
Sbjct: 735 ILCPVHPIVW 744
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 25.4 bits (53), Expect = 5.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 319 PYEVEEYRNNHEVTVSGVDV 378
PYE++ YRN H +S D+
Sbjct: 253 PYEIQVYRNKHWFPISTEDL 272
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 5.7
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -3
Query: 448 PLSLHLVAHNQENL--LLQSIE 389
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 25.0 bits (52), Expect = 7.5
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +1
Query: 268 PFNKN----FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVDVHNPIQ 393
PF K FYDP P LK + +E+ + + V +H P+Q
Sbjct: 117 PFTKGGYGGFYDPRPGCLKFTTHEINVSYTDTSIPV----IHIPVQ 158
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 269 LSTKTFMIHILQFSKDHHMKSKSTEIIT 352
+STK H+L S D H+ ++ E++T
Sbjct: 340 ISTKALR-HVLNLSYDFHLNKRAGEVLT 366
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -3
Query: 94 IIPVTR-HD*FSDLVEDVYLNYGFFLTQ 14
++PVT+ + D++ED++ NY F +T+
Sbjct: 221 VVPVTQVKNAPDDVLEDLFKNYDFIVTE 248
>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 521
Score = 24.6 bits (51), Expect = 9.9
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +1
Query: 340 RNNHEVTVSGVDVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQG 483
R + +TV+G++V + + Y PD+ Q G+ Y + + +G
Sbjct: 153 RYDDNITVAGINVQDSLSYSHYQALPDF-QFGITLKEYVPSSMLPYKG 199
>SPBC1A4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 24.6 bits (51), Expect = 9.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 289 DPHPTVLKRSPYEVEEYRNNHEVTVSGVDVHNP 387
DP P+ L E+E+ R+N ++T+S +D P
Sbjct: 93 DPEPSALMPLQ-ELEKIRSNIQLTISQIDNLTP 124
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,066,614
Number of Sequences: 5004
Number of extensions: 39727
Number of successful extensions: 114
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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