Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021243
(555 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 4e-13
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 61 5e-10
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 56 3e-08
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 50 1e-06
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 48 4e-06
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 48 4e-06
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 42 4e-04
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.27
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 32 0.27
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 31 0.48
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 31 0.48
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 31 0.84
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 31 0.84
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 30 1.5
SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011) 29 2.6
SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07) 28 5.9
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006) 27 7.8
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 71.7 bits (168), Expect = 4e-13
Identities = 31/89 (34%), Positives = 48/89 (53%)
Frame = +1
Query: 241 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVDVHNPIQYFEEANFPD 420
P + +PFNKNFY+ HP + K+S E+++ R + VSG P F F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526
Query: 421 YVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
+ ++ + Y +PT IQ Q PIA+SG+
Sbjct: 527 QMMASIRKLEYTQPTQIQCQALPIALSGR 555
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 61.3 bits (142), Expect = 5e-10
Identities = 27/56 (48%), Positives = 38/56 (67%)
Frame = +1
Query: 313 RSPYEVEEYRNNHEVTVSGVDVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 480
R +EV+ YR + ++TV+G +V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 58.8 bits (136), Expect = 3e-09
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVDVHNPIQYFEEANFPDYVQQ 432
V QPF K+FY P + K +P E +E+R + E + V G + P++ + + +
Sbjct: 59 VVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKILD 118
Query: 433 GVKTMGYKEPTPIQAQGWPIAMSGK 507
+K Y++PTPIQAQ P+ MSG+
Sbjct: 119 VLKKNSYEKPTPIQAQAIPVIMSGR 143
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 55.6 bits (128), Expect = 3e-08
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVDVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 465
Y HPT+ + +V++ R+ E+ V G V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 466 PIQAQGWPIAMSGK-I*LAYSNGFRQTLATS 555
PIQ Q P+ +SG+ + + S G + L +S
Sbjct: 221 PIQMQVLPVLLSGRDVMVCASTGSGKLLPSS 251
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +1
Query: 325 EVEEYRNNHEVTVSGVDVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 492
++ +R+ + V G DV +P++ F E FPDY+ V+ GY PTPIQ Q P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196
Query: 493 AMSG 504
G
Sbjct: 197 MAHG 200
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 48.4 bits (110), Expect = 4e-06
Identities = 20/57 (35%), Positives = 34/57 (59%)
Frame = +1
Query: 337 YRNNHEVTVSGVDVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
+R + ++ G + PI+ ++EA PD + + V +GYK+PTPIQ Q PI + +
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNR 139
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 48.4 bits (110), Expect = 4e-06
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = +1
Query: 271 FNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVDVHNPIQYFEEANFPDYVQQGVKTMG 450
F ++YD + V + S V+E R + + + G D PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 451 YKEPTPIQAQGWPIAMSGK--I*LAYSNGFRQTLATS 555
++ PTPIQ Q MSG+ I LA G +TLA S
Sbjct: 92 FQVPTPIQMQSLSCVMSGRDIIGLA-ETGSGKTLAYS 127
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = +1
Query: 352 EVTVSGVDVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
EV VSG + I FEEAN + V+ YK+PTP+Q PI ++G+
Sbjct: 698 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGR 749
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = +1
Query: 352 EVTVSGVDVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
EV VSG + I FEEAN + V+ YK+PTP+Q PI ++G+
Sbjct: 121 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGR 172
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 361 VSGVDVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
VSG + I F E F + + + GY+ PTP+Q PI M+G+
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGR 517
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 32.3 bits (70), Expect = 0.27
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +1
Query: 373 DVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 486
D+H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 32.3 bits (70), Expect = 0.27
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 388 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*L-AYSNGFRQTLA 549
++ F + G+ G+ PT IQ QG P+A+SG+ L A G +TLA
Sbjct: 49 VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKTLA 103
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 31.5 bits (68), Expect = 0.48
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYS-NGFRQTLA 549
FE+ + G+ G+ +P+PIQ + P+A++G+ LA + NG +T A
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAA 100
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 31.5 bits (68), Expect = 0.48
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYS-NGFRQTLA 549
FE+ + G+ G+ +P+PIQ + P+A++G+ LA + NG +T A
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAA 100
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 30.7 bits (66), Expect = 0.84
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 430 QGVKTMGYKEPTPIQAQGWPIAMSGK 507
+ V +G+ PTPIQA P+A+ GK
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGK 48
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 30.7 bits (66), Expect = 0.84
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 388 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
I FE+ + + + V GYK+PTP+Q PI + GK
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPI-VKGK 912
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 30.7 bits (66), Expect = 0.84
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +1
Query: 349 HEVTVSGVDVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 501
HEV V D +P+ + FEE +++GV MG+ +P+ IQ P+ ++
Sbjct: 86 HEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLA 139
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 283 FYDPHPTVLKRSPYEVEEYRNN--HEVTVSGVDVHNPIQYFEEANFPDY 423
+ D VL E EE NN H++ + + +HNP YFE+ + DY
Sbjct: 217 YRDEDDGVLVPIEQEAEEEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011)
Length = 1199
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 227 QNMRRPDWDLFHSNLSTKTFMIHILQFSKD 316
+N RR WD FHSN+S + H+ F D
Sbjct: 768 RNKRR--WDSFHSNVSADSGSAHMFDFDTD 795
>SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 233 CSDLQRILFSHQILQILQIYCHRC-QIETN 147
CS +L +IL+ +YC +C Q ETN
Sbjct: 14 CSLCSEVLTEPKILRCFHVYCQKCLQAETN 43
>SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)
Length = 401
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 164 CQIETNYRRICCLLQIWN-HRFHGYYSS 84
C + +YRR CC L +W H + Y+SS
Sbjct: 218 CCVRVDYRRKCC-LHVWRVHTTNTYWSS 244
>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
Length = 1552
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +2
Query: 425 CNKV*RQWVTKNRRLFKLKAGR*LCLERFSWRTQTGSGK 541
CN+ R V K+RRL AGR L T +GS K
Sbjct: 59 CNESGRMSVDKDRRLISTSAGRVTKLPPIGAPTSSGSNK 97
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,014,944
Number of Sequences: 59808
Number of extensions: 280324
Number of successful extensions: 785
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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