Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021243
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       53   2e-09
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   1.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   1.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   1.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   1.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   6.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   6.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   6.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   8.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 53.2 bits (122), Expect = 2e-09
 Identities = 24/55 (43%), Positives = 34/55 (61%)
 Frame = +1

Query: 343 NNHEVTVSGVDVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
           +N +V VSG +V  PI+ FE A   + V   +K  GYK+PTP+Q    PI M+G+
Sbjct: 180 DNIQVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGR 234


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 462 DAYSSSRLADSYVWKDLVGVLKRVPA 539
           ++ S  + A +YVWK+  G L++ P+
Sbjct: 205 ESISYEQTAITYVWKNDEGTLRKSPS 230


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 462 DAYSSSRLADSYVWKDLVGVLKRVPA 539
           ++ S  + A +YVWK+  G L++ P+
Sbjct: 205 ESISYEQTAITYVWKNDEGTLRKSPS 230


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 462 DAYSSSRLADSYVWKDLVGVLKRVPA 539
           ++ S  + A +YVWK+  G L++ P+
Sbjct: 256 ESISYEQTAITYVWKNDEGTLRKSPS 281


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 462 DAYSSSRLADSYVWKDLVGVLKRVPA 539
           ++ S  + A +YVWK+  G L++ P+
Sbjct: 205 ESISYEQTAITYVWKNDEGTLRKSPS 230


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -3

Query: 250 PIWATHVLTSREFFFP 203
           P+W  H+   R   FP
Sbjct: 634 PVWGRHIYDGRAMGFP 649


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 84  TGIIAVETVVPNLEEATNSA 143
           T + A   V P +EE TN+A
Sbjct: 412 TALGAAALVAPGMEEPTNTA 431


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -3

Query: 250 PIWATHVLTSREFFFP 203
           P+W  H+   R   FP
Sbjct: 634 PVWGRHIYDGRAMGFP 649


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 554 DVANVCRNPFEYAN 513
           DV + CR PF++ N
Sbjct: 407 DVRDGCRTPFQWDN 420


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,063
Number of Sequences: 438
Number of extensions: 2788
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)