Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021243
(555 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 101 2e-22
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 94 6e-20
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 94 6e-20
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 73 2e-13
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 69 3e-12
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 69 3e-12
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 69 3e-12
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 65 3e-11
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 65 3e-11
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 62 2e-10
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 56 2e-08
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 50 1e-06
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 44 9e-05
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 42 4e-04
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 39 0.003
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 37 0.008
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 37 0.008
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 36 0.018
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 36 0.024
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 35 0.042
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 34 0.073
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 34 0.073
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 34 0.073
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 33 0.17
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 33 0.17
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 32 0.30
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 31 0.52
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 31 0.52
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 31 0.52
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 31 0.52
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 31 0.52
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 31 0.68
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 29 2.1
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 28 3.6
At2g33420.1 68415.m04096 expressed protein 28 3.6
At5g43990.2 68418.m05382 SET domain-containing protein identical... 28 4.8
At5g43990.1 68418.m05383 SET domain-containing protein identical... 28 4.8
At3g47580.1 68416.m05180 leucine-rich repeat transmembrane prote... 28 4.8
At3g10490.2 68416.m01259 no apical meristem (NAM) family protein... 28 4.8
At3g10480.2 68416.m01257 no apical meristem (NAM) family protein... 28 4.8
At3g10480.1 68416.m01256 no apical meristem (NAM) family protein... 28 4.8
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 28 4.8
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 28 4.8
At2g25460.1 68415.m03049 expressed protein 27 6.4
At5g26580.1 68418.m03186 MADS-box protein (AGL34) MADS box prote... 27 8.4
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 27 8.4
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 27 8.4
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 27 8.4
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 27 8.4
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 101 bits (243), Expect = 2e-22
Identities = 47/91 (51%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Frame = +1
Query: 238 SPR-LGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVDVHNPIQYFEEANF 414
SPR L L PF KNFY P V + EVEEYR E+TV G D+ P++ F + F
Sbjct: 47 SPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGF 106
Query: 415 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
PDYV + VK G+ EPTPIQ+QGWP+AM G+
Sbjct: 107 PDYVLEEVKKAGFTEPTPIQSQGWPMAMKGR 137
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 93.9 bits (223), Expect = 6e-20
Identities = 39/89 (43%), Positives = 58/89 (65%)
Frame = +1
Query: 241 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVDVHNPIQYFEEANFPD 420
P+ F +L F KNFY PTV + +V YR +++V G DV P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 421 YVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
+ + + +G+ EPTPIQAQGWP+A+ G+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGR 203
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 93.9 bits (223), Expect = 6e-20
Identities = 39/89 (43%), Positives = 58/89 (65%)
Frame = +1
Query: 241 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVDVHNPIQYFEEANFPD 420
P+ F +L F KNFY PTV + +V YR +++V G DV P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 421 YVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
+ + + +G+ EPTPIQAQGWP+A+ G+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGR 203
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 72.5 bits (170), Expect = 2e-13
Identities = 29/84 (34%), Positives = 47/84 (55%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVDVHNPIQYFEEANFPDYVQQG 435
+ +P NK+FY+ ++ + E +YR + VSG DVH P++ FE+ F +
Sbjct: 183 IDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSA 242
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGK 507
+K Y++PT IQ Q PI +SG+
Sbjct: 243 IKKQAYEKPTAIQCQALPIVLSGR 266
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 68.5 bits (160), Expect = 3e-12
Identities = 32/72 (44%), Positives = 40/72 (55%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNNHEVTVSGVDVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 471
P P+ S E Y HE+TVSG V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 472 QAQGWPIAMSGK 507
QAQ WPIAM G+
Sbjct: 185 QAQSWPIAMQGR 196
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 68.5 bits (160), Expect = 3e-12
Identities = 32/72 (44%), Positives = 40/72 (55%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNNHEVTVSGVDVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 471
P P+ S E Y HE+TVSG V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 472 QAQGWPIAMSGK 507
QAQ WPIAM G+
Sbjct: 185 QAQSWPIAMQGR 196
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 68.5 bits (160), Expect = 3e-12
Identities = 32/72 (44%), Positives = 40/72 (55%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNNHEVTVSGVDVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 471
P P+ S E Y HE+TVSG V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 472 QAQGWPIAMSGK 507
QAQ WPIAM G+
Sbjct: 185 QAQSWPIAMQGR 196
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 65.3 bits (152), Expect = 3e-11
Identities = 30/84 (35%), Positives = 45/84 (53%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVDVHNPIQYFEEANFPDYVQQG 435
+ +PF KNFY + + + V YR E+ V G DV PIQ++ + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGK 507
+K + Y++P PIQAQ PI MSG+
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGR 434
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 64.9 bits (151), Expect = 3e-11
Identities = 29/84 (34%), Positives = 45/84 (53%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVDVHNPIQYFEEANFPDYVQQG 435
+ +PF KNFY + + + EV YR E+ V G DV PI+++ + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGK 507
+K + Y++P PIQ Q PI MSG+
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGR 567
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 62.1 bits (144), Expect = 2e-10
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Frame = +1
Query: 274 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVDVHNPIQYFEEANFPDYVQQGVK 441
NK+ PH P V SP E+ YR HEVT +G ++ P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 442 TMGYKEPTPIQAQGWPIAMSGK 507
+ G+ PTPIQAQ WPIA+ +
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSR 473
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 55.6 bits (128), Expect = 2e-08
Identities = 28/86 (32%), Positives = 46/86 (53%)
Frame = +1
Query: 250 GFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVDVHNPIQYFEEANFPDYVQ 429
G +P + ++ P V K S +++ R +TV+G D+ PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 430 QGVKTMGYKEPTPIQAQGWPIAMSGK 507
+ +K G PTPIQ QG P+ +SG+
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGR 135
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/74 (32%), Positives = 40/74 (54%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVDVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 465
+ P + K S + + R + V+G D+ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 466 PIQAQGWPIAMSGK 507
PIQ QG P+ ++G+
Sbjct: 171 PIQVQGLPVILAGR 184
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 43.6 bits (98), Expect = 9e-05
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Frame = +1
Query: 340 RNNHEVTVSGVDVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
R + + VSG ++ P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/50 (42%), Positives = 30/50 (60%)
Frame = +1
Query: 358 TVSGVDVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
TV GV H F E N + + +T+GYK+PTPIQA P+A++G+
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGR 205
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +1
Query: 316 SPYEVEEYRNNHEVTVSGVD--VHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 489
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 490 IAMSGKI*LA 519
A++GK LA
Sbjct: 143 AALTGKSLLA 152
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 37.1 bits (82), Expect = 0.008
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +1
Query: 262 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVDVHNPIQYFEEANFPDYVQQGV 438
+ PF + +P P ++ + + + + SG +V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 439 KTMGYKEPTPIQAQGWPIAMSGK 507
+ Y +PTP+Q PI + G+
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGR 197
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 37.1 bits (82), Expect = 0.008
Identities = 14/54 (25%), Positives = 30/54 (55%)
Frame = +1
Query: 337 YRNNHEVTVSGVDVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 498
+R + ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ +
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGL 348
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 35.9 bits (79), Expect = 0.018
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
FE N V +K GYK PTPIQ + P+ +SG
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSG 65
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 35.5 bits (78), Expect = 0.024
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +1
Query: 325 EVEEYRNNHEVTVSGVDV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 498
E E + VT GV+ + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 499 SGK 507
G+
Sbjct: 150 DGR 152
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 34.7 bits (76), Expect = 0.042
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGK 507
V + G+ P+PIQAQ WPIAM +
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNR 267
Score = 30.3 bits (65), Expect = 0.90
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 331 EEYRNNHEVTVSGVDVHNPIQYFEEANFPD 420
E Y HE+TVSG V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 33.9 bits (74), Expect = 0.073
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +1
Query: 268 PF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVDVHNPIQYFEEANFPDYVQQGVKT 444
PF N DP + + E Y + + SG +V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 445 MGYKEPTPIQAQGWPIAMSGK 507
Y +PTP+Q PI +G+
Sbjct: 164 CKYVKPTPVQRNAIPILAAGR 184
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 33.9 bits (74), Expect = 0.073
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 355 VTVSGVDVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 501
V SG DV P+ F + + D + ++ Y PTP+Q PI ++
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLA 187
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 33.9 bits (74), Expect = 0.073
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 355 VTVSGVDVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 501
V SG DV P+ F + + D + ++ Y PTP+Q PI ++
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLA 187
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 32.7 bits (71), Expect = 0.17
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYS-NGFRQTLA 549
FE+ + G+ G++ P+PIQ + PIA++G+ LA + NG +T A
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAA 184
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 32.7 bits (71), Expect = 0.17
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYS-NGFRQTLA 549
FE+ + G+ G++ P+PIQ + PIA++G+ LA + NG +T A
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAA 184
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 31.9 bits (69), Expect = 0.30
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +1
Query: 325 EVEEYRNNHEVTVSGVDVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
EVEE RN+ E + P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 505 KI*LAYS-NGFRQTLA 549
K +A + G +TLA
Sbjct: 84 KDVVARAKTGSGKTLA 99
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 31.1 bits (67), Expect = 0.52
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
Frame = +1
Query: 265 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVDVHNPIQYFEEANFPDYVQQGVKT 444
+P K T K EVE+ ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 445 MGYKEPTPIQAQGWPIAMSGKI*L-AYSNGFRQTLA 549
MG+ T IQA+ P M G+ L A G +TLA
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLA 207
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 31.1 bits (67), Expect = 0.52
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYS-NGFRQT 543
FE+ + +G+ G+++P+PIQ + PIA++G LA + NG +T
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKT 175
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 31.1 bits (67), Expect = 0.52
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYS-NGFRQT 543
FE+ + +G+ G+++P+PIQ + PIA++G LA + NG +T
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKT 175
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 31.1 bits (67), Expect = 0.52
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYS-NGFRQT 543
FE+ + +G+ G+++P+PIQ + PIA++G LA + NG +T
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKT 205
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 31.1 bits (67), Expect = 0.52
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
PI+ F++ D V +GV GYK+P+ IQ + + G+
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGR 60
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 30.7 bits (66), Expect = 0.68
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 388 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
++ F E + + + + +G+K P+ IQA+ P A+ GK
Sbjct: 8 VKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGK 47
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 29.1 bits (62), Expect = 2.1
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 180 LEDLEDLVGKKNSLEVRTCVAQIGICFTPTF 272
+ D++ +GK V C A++G+CF+ T+
Sbjct: 530 VSDIKTWMGKFKDKNVAKCAARMGLCFSSTY 560
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 445 MGYKEPTPIQAQGWPIAMSGK 507
MG++ PT +QAQ P+ +SG+
Sbjct: 48 MGFEAPTLVQAQAIPVILSGR 68
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 19 SKRIHSLNKHLQLNPKI 69
S IHSLNK L LNP+I
Sbjct: 789 SSHIHSLNKTLSLNPRI 805
>At5g43990.2 68418.m05382 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 740
Score = 27.9 bits (59), Expect = 4.8
Identities = 20/71 (28%), Positives = 35/71 (49%)
Frame = +1
Query: 235 ASPRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVDVHNPIQYFEEANF 414
ASP LG +L+ + N + P +L P +E + E+ ++ V+ PI ++
Sbjct: 146 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 202
Query: 415 PDYVQQGVKTM 447
PD V +G +M
Sbjct: 203 PDSVDRGDSSM 213
>At5g43990.1 68418.m05383 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 717
Score = 27.9 bits (59), Expect = 4.8
Identities = 20/71 (28%), Positives = 35/71 (49%)
Frame = +1
Query: 235 ASPRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVDVHNPIQYFEEANF 414
ASP LG +L+ + N + P +L P +E + E+ ++ V+ PI ++
Sbjct: 123 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 179
Query: 415 PDYVQQGVKTM 447
PD V +G +M
Sbjct: 180 PDSVDRGDSSM 190
>At3g47580.1 68416.m05180 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21 - Oryza sativa,
PIR:A57676
Length = 1011
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 423 CATRCKDNGLQRTDAYSSSRLADSYVWKDLVGVLKR 530
C T + GL+ + Y ++RLA S V K+L+ + +R
Sbjct: 966 CLTLVLEVGLRCCEEYPTNRLATSEVAKELISIRER 1001
>At3g10490.2 68416.m01259 no apical meristem (NAM) family protein
similar to to NAC2 (GI:645671) [Arabidopsis thaliana];
contains Pfam PF02365: No apical meristem (NAM) protein
Length = 451
Score = 27.9 bits (59), Expect = 4.8
Identities = 16/64 (25%), Positives = 34/64 (53%)
Frame = +1
Query: 253 FVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVDVHNPIQYFEEANFPDYVQQ 432
+V + F+KN P P+ + +P+ EE+ ++ + G+DV ++ AN D + Q
Sbjct: 170 YVLCRVFHKNNIGP-PSGNRYAPFMEEEWADDEGALIPGIDVKLRLEPPPVANGNDQMDQ 228
Query: 433 GVKT 444
+++
Sbjct: 229 EIQS 232
>At3g10480.2 68416.m01257 no apical meristem (NAM) family protein
similar to to NAC2 (GI:645671) [Arabidopsis thaliana];
contains Pfam PF02365: No apical meristem (NAM) protein;
N-terminus similar to unknown protein GB:AAD25613
[Arabidopsis thaliana]
Length = 446
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = +1
Query: 253 FVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVDVHNPIQYFEEANFPDYVQQ 432
+V + F+KN P P+ + +P+ EE+ + + G+DV ++ +AN + + Q
Sbjct: 169 YVLCRVFHKNNIGP-PSGNRYAPFMEEEWADGGGALIPGIDVRVRVEALPQANGNNQMDQ 227
>At3g10480.1 68416.m01256 no apical meristem (NAM) family protein
similar to to NAC2 (GI:645671) [Arabidopsis thaliana];
contains Pfam PF02365: No apical meristem (NAM) protein;
N-terminus similar to unknown protein GB:AAD25613
[Arabidopsis thaliana]
Length = 447
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = +1
Query: 253 FVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVDVHNPIQYFEEANFPDYVQQ 432
+V + F+KN P P+ + +P+ EE+ + + G+DV ++ +AN + + Q
Sbjct: 170 YVLCRVFHKNNIGP-PSGNRYAPFMEEEWADGGGALIPGIDVRVRVEALPQANGNNQMDQ 228
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
FEE PD + ++ G+ PT +Q+ P + G
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKG 147
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 19 SKRIHSLNKHLQLNPKI 69
S ++HSLNK L LNP++
Sbjct: 786 SSQLHSLNKSLSLNPRV 802
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 27.5 bits (58), Expect = 6.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 155 ETNYRRICCLLQIWNHRFHGYY 90
E + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
>At5g26580.1 68418.m03186 MADS-box protein (AGL34) MADS box protein
EGM1, Eucalyptus grandis, EMBL:AF029975; contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain)
Length = 345
Score = 27.1 bits (57), Expect = 8.4
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 280 NFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVDVHNPIQYFEEANFPDYVQ-QGVKTMGYK 456
+F D + T + +P+ + + +S D+H P Q+ NF D+ Q Q + + Y+
Sbjct: 198 HFLDANATAVT-APFGFSNHIQYKNMNMSQ-DLHRPFQHLVPTNFCDFFQNQNMNQVQYQ 255
Query: 457 EP 462
P
Sbjct: 256 AP 257
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.1 bits (57), Expect = 8.4
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVDVHNPIQYFEEANFPDYVQQGVKTMGYKEP 462
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 463 TPIQAQGWPIAMS 501
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.1 bits (57), Expect = 8.4
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVDVHNPIQYFEEANFPDYVQQGVKTMGYKEP 462
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 463 TPIQAQGWPIAMS 501
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.1 bits (57), Expect = 8.4
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVDVHNPIQYFEEANFPDYVQQGVKTMGYKEP 462
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 463 TPIQAQGWPIAMS 501
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
FE ++ + K +G ++PTP+Q P ++G+
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGR 96
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,610,590
Number of Sequences: 28952
Number of extensions: 199231
Number of successful extensions: 662
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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