Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021242
         (801 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100656-5|AAF99963.2|  259|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z68318-5|CAA92694.1|  418|Caenorhabditis elegans Hypothetical pr...    29   5.1  
AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    28   8.9  
AF077545-1|AAC26306.2|  506|Caenorhabditis elegans Hypothetical ...    28   8.9  
AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical ...    28   8.9  

>AF100656-5|AAF99963.2|  259|Caenorhabditis elegans Hypothetical
           protein F49F1.6 protein.
          Length = 259

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = -1

Query: 783 PTRHSPKAPR*DFDIEPAFFRTPA---HRRYAPQTCQYHRGCGAPTARRTNATTSFLTAT 613
           P R SP  P  D   E A +  P     + + P+TC      G P A+ T  TT   T T
Sbjct: 137 PPRPSPTPPCFDSGNECATYTLPCDVNQKIFCPRTCGVCGSTGVPMAQTTLLTTVKPTTT 196

Query: 612 IL 607
           ++
Sbjct: 197 VV 198


>Z68318-5|CAA92694.1|  418|Caenorhabditis elegans Hypothetical
           protein T21B10.4 protein.
          Length = 418

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 377 GSIPEREPEKRLPHPR-KAAGAQITHSRHGR**RKI-TIRDSYEASNRNEYTLNI 535
           G  P+     +  HP+ + AG  +    +GR   KI TIR+   + N N +TLN+
Sbjct: 55  GHCPQFMVNPKTNHPKFRFAGVHLVRDPNGRFPPKIMTIREDDHSFNANIFTLNV 109


>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 431 LPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI 327
           +P+  V+  ++ PS +S     + VTT  V+ TTI
Sbjct: 559 VPTTTVIQTTETPSTKSKTTKKVKVTTTTVSTTTI 593


>AF077545-1|AAC26306.2|  506|Caenorhabditis elegans Hypothetical
           protein H41C03.3 protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = -3

Query: 700 CSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 581
           C  NV + P     DSA H  N   +N     I    WNY
Sbjct: 211 CLPNVLLLPDEESVDSAGHNINLAHYNCLRVLINKPGWNY 250


>AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical
           protein E04A4.6 protein.
          Length = 466

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 67  DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTL 171
           D+  G++   WF +++SV WI +V+   I   +T+
Sbjct: 224 DSLPGNVDNNWFEQTFSVYWIPLVVASEIETNQTV 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,916,454
Number of Sequences: 27780
Number of extensions: 371991
Number of successful extensions: 945
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)