Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021241
         (836 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    25   0.56 
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    24   1.7  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    23   3.0  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    23   4.0  

>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -3

Query: 633 HEII*NIIRVLNVCVVRTAHFYFHNVLFN--NPRVITYRFNKENLKPILWT 487
           HE +  +++ +    V+T H YF N LF+  +P  +  ++  + L P ++T
Sbjct: 112 HEELLEVLKKVVTYSVKTGHPYFVNQLFSAVDPYGLVAQWATDALNPSVYT 162


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 789 CHQVVHNPTCMCPS 748
           CH +V++ +C CPS
Sbjct: 237 CHDLVNSFSCSCPS 250


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = +2

Query: 410 TKGGEVAVFDATNSTLDRRRMIRDLVVHKMGFKFSLLNLYVMTLGLLNKTLWK*K*AVRT 589
           +KG  +  F      L ++ +            F++ NLY++ L L +  LW     VR 
Sbjct: 84  SKGKVIKSFFNQGYELSKQEIFNCCSKKSFRMNFAIFNLYMVLLLLFDAYLWISSVGVRM 143

Query: 590 TQTF 601
            Q +
Sbjct: 144 FQYY 147


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = -2

Query: 793 CMSSSSTQSDLYVPFVLVNDHLLSGIVYLP*SCIQTPGS 677
           C     T+   Y  +     HL  G+V +   C+QT  S
Sbjct: 104 CAKIKKTKRYCYYYYAFFGVHLAYGVVIIYSICVQTEKS 142


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,996
Number of Sequences: 336
Number of extensions: 4669
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23036718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)