Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021241
(836 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0466 + 3702771-3703016,3703133-3703196,3703757-3704055,370... 73 2e-13
03_02_0658 + 10228794-10228943,10229042-10229105,10229510-102298... 68 1e-11
12_01_0026 + 219663-220843,222201-222447,222574-224535 31 1.1
03_03_0032 + 13927959-13930040,13930322-13930798 30 2.6
01_05_0446 - 22334291-22334751,22335304-22336191,22336290-223365... 30 2.6
04_03_0008 + 9296711-9298096 29 3.5
11_06_0042 + 19550260-19550278,19550418-19550530,19551841-195520... 29 6.1
04_03_0735 + 19141038-19143227 28 8.0
02_04_0266 - 21415912-21418563 28 8.0
>05_01_0466 +
3702771-3703016,3703133-3703196,3703757-3704055,
3704666-3704881,3705216-3705422,3705697-3705789,
3706098-3706196,3706300-3706329,3706885-3706938,
3707533-3707586,3707658-3707735,3707927-3708018,
3708093-3708150,3708248-3708322,3708930-3708977,
3709131-3709228,3709446-3709521,3709659-3709721,
3709810-3709901,3710207-3710275,3710410-3710473,
3710545-3710610,3710700-3710777
Length = 772
Score = 73.3 bits (172), Expect = 2e-13
Identities = 34/71 (47%), Positives = 47/71 (66%)
Frame = +2
Query: 263 TRVFNLGEYRRHATSAYTSHEFFRADNKEAMAIRQQCALDALQDVCEWLTKGGEVAVFDA 442
TR FN+G+YRR A S +FFR DN E + R + A A++D+ +W+ GG+V +FDA
Sbjct: 401 TRHFNVGKYRRLKHGANQSADFFRDDNPEGIEARNEVAALAMEDMIDWMHGGGQVGIFDA 460
Query: 443 TNSTLDRRRMI 475
TNST RR M+
Sbjct: 461 TNSTRKRRYML 471
Score = 58.8 bits (136), Expect = 5e-09
Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Frame = +1
Query: 505 QVFFVESICDDPRIIEQNIMEVKVSSPDYTNIQNTDNVLNDFMLRIEHYQEKYEPLDESL 684
++ F+E+IC+DP IIE+N+ SPDY + + + + DF R+ +Y++ YEP+
Sbjct: 480 KIIFLETICNDPNIIERNVRLKIQQSPDYADQPDYETGVRDFKERLANYEKVYEPVQ--- 536
Query: 685 ESEYSFMEDIRYRREGGRSQARRAH---TSRIVYYLMTYILYP 804
E Y M D+ + +GG+ Q RIV++L+ L P
Sbjct: 537 EGSYIKMIDM-VKGQGGQLQVNNISGYLPGRIVFFLVNSHLTP 578
Score = 41.5 bits (93), Expect = 8e-04
Identities = 16/25 (64%), Positives = 21/25 (84%)
Frame = +3
Query: 180 IAMVGLPARGKTYISKKLSRYLNWI 254
I +VGLPARGKT+ + KL+RYL W+
Sbjct: 373 IVLVGLPARGKTFTAAKLTRYLRWL 397
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3
Query: 792 HIVPRTIYLTRHGES 836
H+ PR I LTRHGES
Sbjct: 575 HLTPRPILLTRHGES 589
>03_02_0658 +
10228794-10228943,10229042-10229105,10229510-10229805,
10230689-10230904,10231409-10231549,10232407-10232499,
10234010-10234108,10234198-10234227,10234274-10234360,
10234636-10234689,10234758-10234835,10235128-10235202,
10236265-10236356,10236433-10236490,10236590-10236664,
10236966-10237013,10239003-10239065,10239167-10239258,
10239693-10239761,10239867-10239930,10240007-10240072,
10240170-10240271
Length = 703
Score = 67.7 bits (158), Expect = 1e-11
Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 11/89 (12%)
Frame = +2
Query: 263 TRVFNLGEYRR-----HATSAYTSH------EFFRADNKEAMAIRQQCALDALQDVCEWL 409
T+ FN+G+YRR + TS S+ +FFR DNKE + R + A A++D+ W+
Sbjct: 346 TKHFNVGKYRRLKHGINQTSLSASNSVEQTADFFRGDNKEGVEARNEVAALAMEDMLSWM 405
Query: 410 TKGGEVAVFDATNSTLDRRRMIRDLVVHK 496
+GG+V +FDATNST +RR M+ + K
Sbjct: 406 QEGGQVGIFDATNSTRNRRNMLMKMAEGK 434
Score = 49.6 bits (113), Expect = 3e-06
Identities = 22/58 (37%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Frame = +1
Query: 508 VFFVESICDDPRIIEQNIMEVKVS-SPDYTNIQNTDNVLNDFMLRIEHYQEKYEPLDE 678
+ F+E+IC+D ++E+N M +KV SPDY + + + DF R+ +Y++ YEP++E
Sbjct: 462 IIFLETICNDQNVLERN-MRLKVQRSPDYAEQTDFEAGVRDFKERLAYYEKVYEPVEE 518
Score = 41.5 bits (93), Expect = 8e-04
Identities = 16/25 (64%), Positives = 21/25 (84%)
Frame = +3
Query: 180 IAMVGLPARGKTYISKKLSRYLNWI 254
I +VGLPARGKT+ + KL+RYL W+
Sbjct: 318 IVLVGLPARGKTFTAAKLTRYLRWL 342
>12_01_0026 + 219663-220843,222201-222447,222574-224535
Length = 1129
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Frame = +1
Query: 451 YFGPTADDKRPCSPQDGLQVFFVESICDDP---RIIEQNIMEVKVSSPDYTNIQNTDNVL 621
Y G AD +R +P G + V+ P + + +SSP TN +N D VL
Sbjct: 520 YIGVPADKERSANPSKGSESIGVQKDVIKPCAVSAVHSSSTARPISSPSVTNKRNEDLVL 579
Query: 622 NDFMLRIEHYQEKYEPLDESLESEYSFMED 711
N L+ H + + ++S++ + +
Sbjct: 580 N---LQARHSKSDENLQERGMQSQHGTLSN 606
>03_03_0032 + 13927959-13930040,13930322-13930798
Length = 852
Score = 29.9 bits (64), Expect = 2.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 195 LPARGKTYISKKLSRYLNWIESIQEY 272
LP G ++SKK+ R LNW++ + +
Sbjct: 225 LPYTGWVFVSKKIGRLLNWLQVLSAF 250
>01_05_0446 -
22334291-22334751,22335304-22336191,22336290-22336550,
22337129-22337588
Length = 689
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -3
Query: 516 KENLKPILWTTRSLIIRRRSK-VEFVASKTATSPPLVSHSHTSCN 385
+ N + + W+TR IIR +K +E++ S A PPLV H + S +
Sbjct: 516 RSNGRVLEWSTRISIIRGIAKGIEYLHSTRANKPPLV-HQNISAD 559
>04_03_0008 + 9296711-9298096
Length = 461
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +3
Query: 105 EGWKYLNKQFFGDGERSNYVNIPHVIAMVGLPARGKTYISKKLSRYLNWIESIQEYL 275
+GW + G+ SN+ N P + ++ + A+ +SKKL+ +E+I L
Sbjct: 180 QGWNQPRPYYQGENNNSNFSNQPSLKDLIFVQAKTTDALSKKLAANDKILENINVQL 236
>11_06_0042 +
19550260-19550278,19550418-19550530,19551841-19552051,
19552164-19552401,19552662-19552752,19552883-19552917,
19554179-19554452
Length = 326
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -3
Query: 618 NIIRVLNVCVVRTAHFYFHNVLFNNPRVITYRFNKENLKPILWTTRSLII 469
N++RVL VCV + + + N + T+ F+++ K + W R II
Sbjct: 83 NLVRVLGVCVEKQEKLLVYEYM-PNRSLDTFIFDRDKSKELGWEKRFKII 131
>04_03_0735 + 19141038-19143227
Length = 729
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 251 DRINTRVFNLGEYRRHATSAYTSHEFFRADNKEAMA 358
+R N+R + RRH+ YT+ + F DN+E +A
Sbjct: 322 ERTNSRRGRFSKRRRHSNDGYTTMD-FGGDNRETVA 356
>02_04_0266 - 21415912-21418563
Length = 883
Score = 28.3 bits (60), Expect = 8.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 668 LWTRAWSLNTASWKIYDTGEKVVV 739
LWTRA+++N W Y VVV
Sbjct: 723 LWTRAYTINLKFWPDYSLATNVVV 746
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,123,554
Number of Sequences: 37544
Number of extensions: 523630
Number of successful extensions: 1421
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1420
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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