Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021241
         (836 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7153| Best HMM Match : 6PF2K (HMM E-Value=1.9e-25)                  74   1e-13
SB_32767| Best HMM Match : No HMM Matches (HMM E-Value=.)              70   2e-12
SB_35489| Best HMM Match : Sec23_BS (HMM E-Value=9.3)                  29   3.5  
SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_18153| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=5)              28   8.2  

>SB_7153| Best HMM Match : 6PF2K (HMM E-Value=1.9e-25)
          Length = 301

 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
 Frame = +2

Query: 269 VFNLGEYRRHATSAYTSHEFFRADNKEAMAIRQQCALDALQDVCEWLTKG---GEVAVFD 439
           VFN+GEYRR A      H+FF+ DN+EA AIR+QCA+D L DV  WL +G    EV VF 
Sbjct: 70  VFNVGEYRRKAVGMDKLHDFFKVDNQEAQAIRRQCAIDCLNDVSSWLDEGVQAAEVKVFS 129

Query: 440 ATNSTLDRRRMIRD 481
                +D+ +   D
Sbjct: 130 PDYKEVDKEQAFND 143



 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 28/74 (37%), Positives = 39/74 (52%)
 Frame = +1

Query: 565 EVKVSSPDYTNIQNTDNVLNDFMLRIEHYQEKYEPLDESLESEYSFMEDIRYRREGGRSQ 744
           EVKV SPDY  +   +   NDF  RI+HYQ  YEPL    + + SF++ I    +   + 
Sbjct: 124 EVKVFSPDYKEVDK-EQAFNDFKERIKHYQAAYEPLTME-DGDLSFIKIINAGEQYLVNN 181

Query: 745 ARRAHTSRIVYYLM 786
                 S+ VY+LM
Sbjct: 182 IDGYLQSKSVYFLM 195


>SB_32767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1259

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 35/73 (47%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
 Frame = +2

Query: 260  NTRVFNLGEYRRHATS-AYTSHEFFRADNKEAMAIRQQCALDALQDVCEWLTKGGEVAVF 436
            N  VF+LG+YRR     +   H FF  +N   M IR++CA   L D+ EWL   G+VA+F
Sbjct: 883  NRWVFSLGDYRRRMLEGSQFDHSFFDPNNPNGMNIREECAKLVLADIVEWLKDKGKVAIF 942

Query: 437  DATNSTLDRRRMI 475
            DATNST  RR  I
Sbjct: 943  DATNSTRKRRETI 955



 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 29/56 (51%), Positives = 41/56 (73%)
 Frame = +1

Query: 505  QVFFVESICDDPRIIEQNIMEVKVSSPDYTNIQNTDNVLNDFMLRIEHYQEKYEPL 672
            +V F+ES+ DDP I++ N+M VK+SSPDY  +Q  +    DF+ RIEHY++ YEPL
Sbjct: 965  RVMFLESVVDDPVIVKSNVMAVKISSPDYKGVQ-PEQACEDFLARIEHYEQAYEPL 1019


>SB_35489| Best HMM Match : Sec23_BS (HMM E-Value=9.3)
          Length = 177

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/69 (26%), Positives = 34/69 (49%)
 Frame = +2

Query: 254 RINTRVFNLGEYRRHATSAYTSHEFFRADNKEAMAIRQQCALDALQDVCEWLTKGGEVAV 433
           R+  ++  LG  R   +S   + E     +     +R+Q +L  ++ +C+  T GGE  +
Sbjct: 25  RLGRKICKLGNIRNRHSSVDHAFEQDHVFHSNRDGLRRQGSLP-VKTICKCTTGGGEHLL 83

Query: 434 FDATNSTLD 460
            +A N+ LD
Sbjct: 84  SNAKNNDLD 92


>SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +1

Query: 601 QNTDNVLNDFMLRIEHYQEKYEPLDESLESEYSFMEDIRYRREGGRSQARRAH 759
           +  D +L + + + E  +EK +  D+ LE E   +E++   R+  +   + AH
Sbjct: 292 EEKDKMLEEELKKRETLEEKQKLQDKILEEERKRLENLEKERQAAQQAMQEAH 344


>SB_18153| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=5)
          Length = 237

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
 Frame = +1

Query: 484 CSPQ-DGLQVFFVESICDDPRIIEQNIMEVKVSSPDYTNIQNTDNVLNDFMLRIEHYQEK 660
           C  Q D L+    ESI D  + +    +  KV+S ++ +++N      + +L+I    + 
Sbjct: 3   CESQIDSLKFEISESIKDVAKQVSN--LSNKVTS-EFKSVKNKSASTAETILKI--LGDL 57

Query: 661 YEPLDESLESEYSFMEDIRYRREGGRSQARRAHTSRIVYYLMT 789
            E  D+ L++E +  +  RY++ GG +   R + S  V Y+ T
Sbjct: 58  GEIKDQLLKTEETVADSTRYKKSGGIAVYIRENISSGVKYIPT 100


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,017,032
Number of Sequences: 59808
Number of extensions: 612976
Number of successful extensions: 1641
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1637
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)