Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021241
         (836 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07110.1 68414.m00756 fructose-6-phosphate 2-kinase / fructos...    74   1e-13
At3g55390.1 68416.m06152 integral membrane family protein MtN24,...    34   0.13 
At3g01310.1 68416.m00042 expressed protein similar to unknown pr...    30   1.7  
At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR...    30   2.2  
At2g17130.2 68415.m01978 isocitrate dehydrogenase subunit 2 / NA...    29   5.1  

>At1g07110.1 68414.m00756 fructose-6-phosphate 2-kinase /
           fructose-2,6-bisphosphatase (F2KP) identical to
           fructose-6-phosphate
           2-kinase/fructose-2,6-bisphosphatase (F2KP) [Arabidopsis
           thaliana] GI:13096098
          Length = 744

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 34/79 (43%), Positives = 50/79 (63%)
 Frame = +2

Query: 260 NTRVFNLGEYRRHATSAYTSHEFFRADNKEAMAIRQQCALDALQDVCEWLTKGGEVAVFD 439
           +T+ FN+G+YRR       S +FFRADN E +  R + A  A++D+  W+ +GG+V +FD
Sbjct: 372 DTKHFNVGKYRRLKHGVNMSADFFRADNPEGVEARTEVAALAMEDMIAWMQEGGQVGIFD 431

Query: 440 ATNSTLDRRRMIRDLVVHK 496
           ATNST  RR M+  +   K
Sbjct: 432 ATNSTRVRRNMLMKMAEGK 450



 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
 Frame = +1

Query: 505 QVFFVESICDDPRIIEQNIMEVKVSSPDYTNIQNTDNVLNDFMLRIEHYQEKYEPLDESL 684
           ++ F+E++C+D RIIE+NI      SPDY+   + +  + DF  R+ +Y++ YEP++   
Sbjct: 452 KIIFLETLCNDERIIERNIRLKIQQSPDYSEEMDFEAGVRDFRDRLANYEKVYEPVE--- 508

Query: 685 ESEYSFMEDIRYRREGGRSQARRAH---TSRIVYYLMTYILYP 804
           E  Y  M D+     GG+ Q          RIV++L+   L P
Sbjct: 509 EGSYIKMIDM-VSGNGGQIQVNNISGYLPGRIVFFLVNTHLTP 550



 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = +3

Query: 180 IAMVGLPARGKTYISKKLSRYLNWI 254
           I +VGLPARGKT+ + KL+RYL W+
Sbjct: 345 IVLVGLPARGKTFTAAKLTRYLRWL 369



 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 780 LDDIHIVPRTIYLTRHGES 836
           L + H+ PR I LTRHGES
Sbjct: 543 LVNTHLTPRPILLTRHGES 561


>At3g55390.1 68416.m06152 integral membrane family protein MtN24,
           Medicago truncatula, EMBL:MTY15290; contains TIGRFAM
           TIGR01569 : plant integral membrane protein TIGR01569;
           contains Pfam PF04535 : Domain of unknown function
           (DUF588)
          Length = 194

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 179 YRNGGSPGTREDIHFQETVTLPELDRINTRVFNL 280
           +RNG SP  R+  HF  TVT  +L R N+ +  L
Sbjct: 7   FRNGESPTLRDHTHFHSTVTAQKLRRFNSLILLL 40


>At3g01310.1 68416.m00042 expressed protein similar to unknown
           protein GB:BAA24863 [Homo sapiens], unknown protein
           GB:BAA20831 [Homo sapiens], unknown protein GB:AAB42264
           [Caenorhabditis elegans]
          Length = 1056

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 369 CCLIAMASLLSALKNSWLVYADVACLLYSPRLNTLVLILSSSGSVTVSWK 220
           C  +   +  S +KNS+  Y D AC+L    L+     LSS+   T+ WK
Sbjct: 293 CSYVCDVNGWSFVKNSYKYYDDAACVLRKMCLDAKAPHLSSTLPPTLPWK 342


>At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1231

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 165 NIPHVIAMVGLPARGKTYISKKL 233
           N   ++ +VG+P  GKTY++KKL
Sbjct: 236 NETRIVEVVGMPGIGKTYLAKKL 258


>At2g17130.2 68415.m01978 isocitrate dehydrogenase subunit 2 / NAD+
           isocitrate dehydrogenase subunit 2 nearly identical to
           NAD+ dependent isocitrate dehydrogenase subunit 2
           [Arabidopsis thaliana] GI:1766048
          Length = 363

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 636 EHEII*NIIRVLNVCVVRTAHFYFHNVLFNNPRVIT 529
           EHE++  ++  L  C  R A + F     NN + +T
Sbjct: 158 EHEVVPGVVESLKFCSERIAKYAFEYAYLNNRKKVT 193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,389,607
Number of Sequences: 28952
Number of extensions: 422623
Number of successful extensions: 1183
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)