Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021240
         (659 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q16UK3 Cluster: Amyloid binding protein; n=1; Aedes aeg...    50   5e-05
UniRef50_UPI000051A213 Cluster: PREDICTED: similar to amyloid be...    48   3e-04
UniRef50_UPI0000E47C3C Cluster: PREDICTED: similar to amyloid be...    47   3e-04
UniRef50_Q9W3Y7 Cluster: CG10695-PA; n=2; Sophophora|Rep: CG1069...    47   5e-04
UniRef50_Q92624 Cluster: Amyloid protein-binding protein 2; n=19...    46   0.001
UniRef50_UPI0000D56D4C Cluster: PREDICTED: similar to amyloid be...    43   0.006
UniRef50_UPI00015B46FD Cluster: PREDICTED: hypothetical protein;...    42   0.010
UniRef50_A3TKI7 Cluster: GAF domain protein; n=1; Janibacter sp....    34   3.5  
UniRef50_A7K9Y6 Cluster: Putative uncharacterized protein z726R;...    33   6.1  
UniRef50_Q2WBC2 Cluster: DTDP-4-dehydrorhamnose 3,5-epimerase an...    33   8.0  

>UniRef50_Q16UK3 Cluster: Amyloid binding protein; n=1; Aedes
           aegypti|Rep: Amyloid binding protein - Aedes aegypti
           (Yellowfever mosquito)
          Length = 538

 Score = 50.0 bits (114), Expect = 5e-05
 Identities = 23/50 (46%), Positives = 33/50 (66%)
 Frame = +2

Query: 254 LLARLCKEFSSLFFVRCDYGAAYTWSMRALKLLTPHTPVKITIEVLHSVA 403
           LLA + ++ S L F R +Y  +Y WS+RALK +  +TP KI ++VL  VA
Sbjct: 91  LLANIYQQISVLHFYRSEYDLSYRWSIRALKHINKNTPDKIIVDVLRQVA 140



 Score = 47.6 bits (108), Expect = 3e-04
 Identities = 24/41 (58%), Positives = 27/41 (65%)
 Frame = +2

Query: 386 VLHSVAVYEEALAALSAAFGRHSLHVATAQEDLAYAHYVLE 508
           + +SVAVY EA   L   FG  +LHVA A EDLAY  YVLE
Sbjct: 191 IANSVAVYTEAHEILCRIFGPRNLHVAVAHEDLAYCLYVLE 231


>UniRef50_UPI000051A213 Cluster: PREDICTED: similar to amyloid beta
           precursor protein (cytoplasmic tail) binding protein 2;
           n=1; Apis mellifera|Rep: PREDICTED: similar to amyloid
           beta precursor protein (cytoplasmic tail) binding
           protein 2 - Apis mellifera
          Length = 569

 Score = 47.6 bits (108), Expect = 3e-04
 Identities = 21/48 (43%), Positives = 30/48 (62%)
 Frame = +2

Query: 260 ARLCKEFSSLFFVRCDYGAAYTWSMRALKLLTPHTPVKITIEVLHSVA 403
           A +  EFS LF+++ +Y  AY WS+ ALK L P    +IT++VL   A
Sbjct: 209 AAIYTEFSILFYMKSEYDEAYRWSIEALKQLKPTLSARITVDVLRQAA 256



 Score = 46.4 bits (105), Expect = 6e-04
 Identities = 22/41 (53%), Positives = 29/41 (70%)
 Frame = +2

Query: 386 VLHSVAVYEEALAALSAAFGRHSLHVATAQEDLAYAHYVLE 508
           +++SV +Y+ ALA     FG+ +LHVA A EDLAYA YV E
Sbjct: 307 IINSVNLYKNALAIRMEIFGKMNLHVALAHEDLAYALYVYE 347


>UniRef50_UPI0000E47C3C Cluster: PREDICTED: similar to amyloid beta
           precursor protein-binding protein 2, partial; n=2;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           amyloid beta precursor protein-binding protein 2,
           partial - Strongylocentrotus purpuratus
          Length = 383

 Score = 47.2 bits (107), Expect = 3e-04
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = +2

Query: 269 CKEFSSLFFVRCDYGAAYTWSMRALKLLTPHTPVKITIE-VLHSVAVYEEALAALSAAFG 445
           C  F S+F  R  +G  +    +   +L       + ++ +  S AVY++AL    +AFG
Sbjct: 1   CHYFYSIFLFREHFGVRHP---KYSDVLLDFGFYLLNVDSICQSTAVYQQALDIRLSAFG 57

Query: 446 RHSLHVATAQEDLAYAHYV 502
             +LHVA A EDLAYA YV
Sbjct: 58  GRNLHVAVAHEDLAYASYV 76



 Score = 33.9 bits (74), Expect = 3.5
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = +1

Query: 511 SSGRFYKAREHAERAIRIIQNLVPPDH 591
           S G+F  A+EHAE+AI II  ++P +H
Sbjct: 80  SYGKFDDAKEHAEKAISIITQILPENH 106


>UniRef50_Q9W3Y7 Cluster: CG10695-PA; n=2; Sophophora|Rep:
           CG10695-PA - Drosophila melanogaster (Fruit fly)
          Length = 686

 Score = 46.8 bits (106), Expect = 5e-04
 Identities = 22/41 (53%), Positives = 27/41 (65%)
 Frame = +2

Query: 386 VLHSVAVYEEALAALSAAFGRHSLHVATAQEDLAYAHYVLE 508
           V  SV +Y+EALA     FG  + HVA A EDL+YA+YV E
Sbjct: 392 VFQSVNIYKEALAVRRGIFGNMNFHVAIAHEDLSYAYYVHE 432


>UniRef50_Q92624 Cluster: Amyloid protein-binding protein 2; n=19;
           Eumetazoa|Rep: Amyloid protein-binding protein 2 - Homo
           sapiens (Human)
          Length = 585

 Score = 45.6 bits (103), Expect = 0.001
 Identities = 20/39 (51%), Positives = 27/39 (69%)
 Frame = +2

Query: 386 VLHSVAVYEEALAALSAAFGRHSLHVATAQEDLAYAHYV 502
           +  SVA+Y+ AL    + FG  ++HVATA EDLAY+ YV
Sbjct: 304 ICQSVAIYQAALDIRQSVFGGKNIHVATAHEDLAYSSYV 342



 Score = 40.3 bits (90), Expect = 0.040
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +2

Query: 242 GFQQLLARLCKEFSSLFFVRCDYGAAYTWSMRALKLLTPHTPVKITIEVLHSVA 403
           G Q   A L  E  +L F +  Y  AY W + A+K +T   PVK+ ++VL   +
Sbjct: 200 GQQANKAALYGELCALLFAKSHYDEAYKWCIEAMKEITAGLPVKVVVDVLRQAS 253



 Score = 35.1 bits (77), Expect = 1.5
 Identities = 16/27 (59%), Positives = 20/27 (74%)
 Frame = +1

Query: 511 SSGRFYKAREHAERAIRIIQNLVPPDH 591
           SSG+F  A  HAERAI II +++P DH
Sbjct: 346 SSGKFDNALFHAERAIGIITHILPEDH 372


>UniRef50_UPI0000D56D4C Cluster: PREDICTED: similar to amyloid beta
           precursor protein (cytoplasmic tail) binding protein 2;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           amyloid beta precursor protein (cytoplasmic tail)
           binding protein 2 - Tribolium castaneum
          Length = 569

 Score = 43.2 bits (97), Expect = 0.006
 Identities = 21/49 (42%), Positives = 29/49 (59%)
 Frame = +2

Query: 257 LARLCKEFSSLFFVRCDYGAAYTWSMRALKLLTPHTPVKITIEVLHSVA 403
           LA L   FS+L+F R +Y  ++ WS +AL LL    P +I IEVL   +
Sbjct: 197 LAGLYANFSTLYFHRSEYDESFAWSKKALVLLNNKLPSRIIIEVLRQAS 245



 Score = 39.9 bits (89), Expect = 0.053
 Identities = 15/27 (55%), Positives = 24/27 (88%)
 Frame = +1

Query: 511 SSGRFYKAREHAERAIRIIQNLVPPDH 591
           SSGRFY ARE+A+R+IR+++ ++P +H
Sbjct: 339 SSGRFYAARENADRSIRLMERILPNNH 365



 Score = 38.7 bits (86), Expect = 0.12
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = +2

Query: 386 VLHSVAVYEEALAALSAAFGRHSLHVATAQEDLAYAHYVLE 508
           +  SV VYE +L      F ++++H+A A ED+AYA YV E
Sbjct: 297 IQESVKVYERSLQIRMDVFEKNNIHLALAHEDMAYALYVNE 337


>UniRef50_UPI00015B46FD Cluster: PREDICTED: hypothetical protein;
           n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
           protein - Nasonia vitripennis
          Length = 495

 Score = 42.3 bits (95), Expect = 0.010
 Identities = 20/41 (48%), Positives = 28/41 (68%)
 Frame = +2

Query: 386 VLHSVAVYEEALAALSAAFGRHSLHVATAQEDLAYAHYVLE 508
           +++SV++Y  AL    + F  ++LHVA A EDLAYA YV E
Sbjct: 222 IVNSVSIYNFALDIRKSIFSLYNLHVAKAHEDLAYALYVQE 262


>UniRef50_A3TKI7 Cluster: GAF domain protein; n=1; Janibacter sp.
           HTCC2649|Rep: GAF domain protein - Janibacter sp.
           HTCC2649
          Length = 619

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 27/74 (36%), Positives = 31/74 (41%)
 Frame = +2

Query: 347 LLTPHTPVKITIEVLHSVAVYEEALAALSAAFGRHSLHVATAQEDLAYAHYVLETLRDAS 526
           L   HT    T E L  VA+      A +A  G   L V T  E  AY H VL  L D  
Sbjct: 490 LAAAHTEAVRTAEAL--VALGRRGDGAAAADLGFAGLIVGTQPEVTAYVHSVLGPLHDYD 547

Query: 527 TRRGSMQRGPLGSY 568
             RG+   G L +Y
Sbjct: 548 MSRGTDLVGTLEAY 561


>UniRef50_A7K9Y6 Cluster: Putative uncharacterized protein z726R;
           n=1; Chlorella virus ATCV-1|Rep: Putative
           uncharacterized protein z726R - Chlorella virus ATCV-1
          Length = 102

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 28/80 (35%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = +2

Query: 368 VKITIEVLHSVAVYEEALAALSAAFGRHSLHVATAQEDLAYAHYVLETLRDASTRRGSMQ 547
           V       HS+  + EALAA  AAF R    +A+    LA    V   LR  S  R SM+
Sbjct: 11  VAFATRFFHSLCAFAEALAAF-AAFWR-DFFIASFWTGLALLMRVRIALRFCSAFRFSMK 68

Query: 548 RGPLGSYRTWCPLTTCS-WR 604
             P  +    C    CS WR
Sbjct: 69  YLPAAAIDCLCVFLACSRWR 88


>UniRef50_Q2WBC2 Cluster: DTDP-4-dehydrorhamnose 3,5-epimerase and
           related enzyme; n=1; Magnetospirillum magneticum
           AMB-1|Rep: DTDP-4-dehydrorhamnose 3,5-epimerase and
           related enzyme - Magnetospirillum magneticum (strain
           AMB-1 / ATCC 700264)
          Length = 194

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
 Frame = +2

Query: 218 QMRQHRHVGFQQLLARLCKEFS-SLFFVRCDYGAAYTWSMRALKLLTPHTPVKITIEVLH 394
           Q R  R V F  L   +C     S  FV+  +  +   ++R L +  P T  K+   V  
Sbjct: 29  QFRDERGVFFDALSPEICAAAGMSAAFVQHSHSVSRKGTVRGLHIQLPRTQGKLVRVVRG 88

Query: 395 SVAVYEEALAALSAAFGRHSLHVATAQED 481
           SV      +   S  FGRH +HV  + E+
Sbjct: 89  SVFDVVADVRPQSPTFGRH-IHVRLSAEN 116


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 521,314,553
Number of Sequences: 1657284
Number of extensions: 8766301
Number of successful extensions: 32955
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 30957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32706
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)