Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021240
         (659 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    23   1.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   5.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   9.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   9.0  

>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +3

Query: 12  LNTQSAYCCFPAAAETYSLALKLLGITEDVAELP 113
           LN    YC           +L +LG+TED+   P
Sbjct: 41  LNLSINYCICGYIFSAILFSLSILGLTEDLNSAP 74


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 430 QRGQRLLVHGDAVQHL 383
           Q GQ + V+GD V HL
Sbjct: 461 QIGQYVTVNGDVVSHL 476


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +1

Query: 103 PSFPNAHSVWRKLAT*PRRLTATSR 177
           P  P     WR+    P RL A SR
Sbjct: 589 PCRPREQLTWRRNFHGPHRLAARSR 613


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +1

Query: 103 PSFPNAHSVWRKLAT*PRRLTATSR 177
           P  P     WR+    P RL A SR
Sbjct: 481 PCRPREQLTWRRNFHGPHRLAARSR 505


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,119
Number of Sequences: 336
Number of extensions: 1927
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)