Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021240
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.45 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   1.8  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   2.4  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    27   2.4  
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    27   3.2  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   4.2  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    26   4.2  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    26   5.5  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   5.5  
SPAC8F11.02c |||diphthamide biosynthesis protein Dph3 |Schizosac...    25   9.7  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    25   9.7  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.7  

>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 19/58 (32%), Positives = 32/58 (55%)
 Frame = -2

Query: 211 SSDISPSISHGFVMSPSVCEATSQVSATLNEHSGSSATSSVMPNSFKASEYVSAAAGK 38
           SS  +PS S     S S   +++ +S+++     SSA+SSV  +S  +S  +S+A  K
Sbjct: 144 SSTATPS-SSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISSADAK 200


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = -2

Query: 211 SSDISPSISHGFVMSPSVCEATSQVSATLNEHSGSSATSSVMPNSFKASEYVSAAA 44
           SS  S S++    ++ S   +T+  S T +  + SSATSS + +S   S  +++++
Sbjct: 78  SSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSS 133



 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = -2

Query: 211 SSDISPSISHGFVMSPSVCEATSQVSATLNEHSGSSATSSVMPNSFKASEYVSAA 47
           SS IS ++S    ++ S    T+  SA+    S    TSS++P+S  +S  +S+A
Sbjct: 242 SSSISSTVSSSTPLTSSN-STTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSA 295


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = -2

Query: 211 SSDISPSISHGFVMSPSVCEATSQVSATLNEHSGSSATSSVMPNSFKA 68
           SS   PS S  F+ + S     S V+ T +  S SS+TSS +P+S  A
Sbjct: 229 SSSSRPSSSSSFITTMSSSTFISTVTVTPS--SSSSSTSSEVPSSTAA 274


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 317 AYTWSMRALKLLTPHTPVKITIEVLHSVAVYEEALAALSAAFG 445
           ++TW  + + L+        T EV  SVAV + A+A +  + G
Sbjct: 87  SFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
 Frame = +2

Query: 131 GGNLRRSL---AD*RRHHESM----RDGGGDIGGVLQMRQHRHVGFQQLLARLCKEFSSL 289
           G  L+R L    D R H   M    + GG D+  +   RQ   V F   L     EF S 
Sbjct: 343 GNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSY 402

Query: 290 FFVRCDY 310
              + DY
Sbjct: 403 CHTKADY 409


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 284 SLFFVRCDYGAAYTWSMRALKLLTPHTPVKITIEVLHSVAVYE 412
           ++ F  C Y +++ WS  AL +L  + P  I   VL S A+++
Sbjct: 212 AILFNLCSYLSSFGWSGLALPILV-YPPTLIWPSVLSSCALFK 253


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 199 SPSISHGFVMSPSVCEATSQVSATLNEHSGSSATSSVMPNSFKAS 65
           SPS S     +PSV  A S +S+T        +T   +P+++ AS
Sbjct: 270 SPSTSSVATSAPSVPSALSSISSTPFMKPSIPSTIPTIPSAYSAS 314


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = -2

Query: 208 SDISPSISHGFVMSPSVCEATSQ---VSATLNEHSGS--SATSSVMPNSFKAS 65
           S++ P +SH  V SP+   + SQ    S  + + S S    TSS++P    AS
Sbjct: 283 SNVPPQLSHSSVPSPAPPRSVSQPTYFSQPMPQFSSSFVPGTSSIVPTLHPAS 335


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 199 SPSISHGFVMSPSVCEATSQVSATLNEHSGSSATSS 92
           SPS +H F    +  +   Q S + N  S SS++SS
Sbjct: 106 SPSFNHSFFEKDNARDIPQQPSHSQNPSSSSSSSSS 141


>SPAC8F11.02c |||diphthamide biosynthesis protein Dph3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 79

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 39  FPA-AAETYSLALKLLGITEDVAELPECSFSV 131
           FP    + + ++L+ L + EDVA  P CS  V
Sbjct: 23  FPCPCGDRFEISLEDLQLGEDVARCPSCSLIV 54


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 145 SQVSATLNEHSGSSATSSVMPNSFKASE 62
           SQ    L   SGS  T  ++P+S+K +E
Sbjct: 136 SQDGVPLQAFSGSERTDFILPDSWKTTE 163


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -2

Query: 211 SSDISPSISHGFVMSPSVCEATSQVSATLNEHSGSSATSSVMPNSFKASEYVSAAA 44
           SS    S +     S     + ++ ++T +  S SSATSSV      AS  +SA+A
Sbjct: 223 SSSFITSTTPASSSSSGAIVSNAKTASTDDSSSASSATSSVSSVVSSASSALSASA 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,004,420
Number of Sequences: 5004
Number of extensions: 31500
Number of successful extensions: 118
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)