Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021240
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0984 - 9985300-9985804,9985894-9986933                           29   2.5  
08_02_0795 + 21273453-21273752                                         28   7.6  
01_01_0878 + 6888459-6889227,6890498-6890523,6891679-6891843,689...    28   7.6  

>12_01_0984 - 9985300-9985804,9985894-9986933
          Length = 514

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +2

Query: 335 RALKLLTPHTPVKITIEVL-HSVAVYEEALAALSAAFGRHSLHVATAQEDLAYAHYVLET 511
           R  KL + H  +  ++++  H +  YEEAL +     G+HSL             Y+++ 
Sbjct: 279 RLTKLRSLHIGLHSSLKLCYHDMRTYEEALKSSLTVLGKHSLRSLVISRADCLGDYLMDL 338

Query: 512 LRD 520
           L D
Sbjct: 339 LCD 341


>08_02_0795 + 21273453-21273752
          Length = 99

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = -2

Query: 367 GRVRSEELERPHAPRVGGSVVAADEEQRAE 278
           GRVR  E  R HA R+GG  V    E  AE
Sbjct: 6   GRVRYGECRRNHAARMGGHAVDGCREFLAE 35


>01_01_0878 +
           6888459-6889227,6890498-6890523,6891679-6891843,
           6892415-6892494,6893001-6893154,6893808-6893864,
           6894103-6894170,6894238-6894344,6894475-6894542,
           6894885-6895007
          Length = 538

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = -2

Query: 169 SPSVCEAT--SQVSATLNE-HSGSSATSSVMPNSFKASEYVSAAAGKQQ 32
           S S CEA+  S  S+  N   SG+++TSS+   S  AS   S+AAG ++
Sbjct: 64  SSSSCEASTCSSSSSAFNPGSSGAASTSSLSAFSSSASTASSSAAGDER 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,070,288
Number of Sequences: 37544
Number of extensions: 279806
Number of successful extensions: 1112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)