Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021240
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38091| Best HMM Match : Viral_Rep (HMM E-Value=5.1)                 47   2e-05
SB_8454| Best HMM Match : ATP1G1_PLM_MAT8 (HMM E-Value=6.5)            47   2e-05
SB_3948| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.48 
SB_33367| Best HMM Match : PGAMP (HMM E-Value=1.2)                     31   1.1  
SB_30255| Best HMM Match : Keratin_B2 (HMM E-Value=3.8)                28   5.9  

>SB_38091| Best HMM Match : Viral_Rep (HMM E-Value=5.1)
          Length = 156

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 24/46 (52%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
 Frame = +2

Query: 374 ITIEVLH-SVAVYEEALAALSAAFGRHSLHVATAQEDLAYAHYVLE 508
           + ++ +H SV VY+ A    S  FG ++LHVATA EDLAYA YV E
Sbjct: 31  LNVDSIHLSVQVYKTAFRIRSEVFGVNNLHVATAHEDLAYAMYVHE 76



 Score = 31.5 bits (68), Expect = 0.63
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 511 SSGRFYKAREHAERAIRIIQNLVPPDH 591
           S+G F +A+ +AER+I I+  L P DH
Sbjct: 78  STGNFAEAKANAERSIDIVTKLFPDDH 104



 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/15 (80%), Positives = 15/15 (100%)
 Frame = +3

Query: 606 TKRVKALILDEIALD 650
           +KRVKALIL+EIA+D
Sbjct: 110 SKRVKALILEEIAID 124


>SB_8454| Best HMM Match : ATP1G1_PLM_MAT8 (HMM E-Value=6.5)
          Length = 321

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 24/46 (52%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
 Frame = +2

Query: 374 ITIEVLH-SVAVYEEALAALSAAFGRHSLHVATAQEDLAYAHYVLE 508
           + ++ +H SV VY+ A    S  FG ++LHVATA EDLAYA YV E
Sbjct: 266 LNVDSIHLSVQVYKTAFRIRSEVFGVNNLHVATAHEDLAYAMYVHE 311



 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 6   RLLNTQSAYCCFPAAAETYSLALKLLGITEDVAELPECSFSVAETC 143
           RLL+ ++ YC F  A  T+  A++L+    +  E    +    E C
Sbjct: 165 RLLHVRTGYCKFAEARHTFDFAMELVQKLRNKGEKVNTAMLYGERC 210


>SB_3948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1112

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +2

Query: 443 GRHSLHVATAQEDLAYAHYVLETLRDASTRRGSMQRGP-LGSYRTWCPLT-TCSWRHETR 616
           G+H+ H  T QE++     + ET       R     G   G+ RT   +T TC+ R+ +R
Sbjct: 267 GKHA-HAGTDQENMRTQVQITETCARRYRLRKHAHAGTNYGNMRTQVQITETCARRYRSR 325

Query: 617 QGSHTGRD 640
           + +H G D
Sbjct: 326 KHTHAGTD 333


>SB_33367| Best HMM Match : PGAMP (HMM E-Value=1.2)
          Length = 392

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 554 PLGSYRTWCPLTTCSWRHETRQGSHTG 634
           P+  +R+WCP  TCS +   R  +  G
Sbjct: 282 PISEHRSWCPWVTCSVKDRGRSSNDQG 308


>SB_30255| Best HMM Match : Keratin_B2 (HMM E-Value=3.8)
          Length = 304

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 506 ETLRDASTRRGSMQRGPLGSYRTWCPLTTCSWRHE 610
           + LRD +   G ++R P G   TWC     +W+H+
Sbjct: 165 DLLRDEAL--GVVERVPYGEPVTWCHRMVVTWKHD 197


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,275,974
Number of Sequences: 59808
Number of extensions: 270532
Number of successful extensions: 1018
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)