Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021240
         (659 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D86981-1|BAA13217.1|  681|Homo sapiens KIAA0228 protein protein.       46   2e-04
BC018121-1|AAH18121.1|  585|Homo sapiens amyloid beta precursor ...    46   2e-04
AF017782-1|AAC83973.1|  585|Homo sapiens PAT1 protein.                 45   2e-04
AB020634-1|BAA74850.2| 1608|Homo sapiens KIAA0827 protein protein.     33   0.90 

>D86981-1|BAA13217.1|  681|Homo sapiens KIAA0228 protein protein.
          Length = 681

 Score = 45.6 bits (103), Expect = 2e-04
 Identities = 20/39 (51%), Positives = 27/39 (69%)
 Frame = +2

Query: 386 VLHSVAVYEEALAALSAAFGRHSLHVATAQEDLAYAHYV 502
           +  SVA+Y+ AL    + FG  ++HVATA EDLAY+ YV
Sbjct: 400 ICQSVAIYQAALDIRQSVFGGKNIHVATAHEDLAYSSYV 438



 Score = 40.3 bits (90), Expect = 0.006
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +2

Query: 242 GFQQLLARLCKEFSSLFFVRCDYGAAYTWSMRALKLLTPHTPVKITIEVLHSVA 403
           G Q   A L  E  +L F +  Y  AY W + A+K +T   PVK+ ++VL   +
Sbjct: 296 GQQANKAALYGELCALLFAKSHYDEAYKWCIEAMKEITAGLPVKVVVDVLRQAS 349



 Score = 35.1 bits (77), Expect = 0.22
 Identities = 16/27 (59%), Positives = 20/27 (74%)
 Frame = +1

Query: 511 SSGRFYKAREHAERAIRIIQNLVPPDH 591
           SSG+F  A  HAERAI II +++P DH
Sbjct: 442 SSGKFDNALFHAERAIGIITHILPEDH 468


>BC018121-1|AAH18121.1|  585|Homo sapiens amyloid beta precursor
           protein (cytoplasmic tail) binding protein 2 protein.
          Length = 585

 Score = 45.6 bits (103), Expect = 2e-04
 Identities = 20/39 (51%), Positives = 27/39 (69%)
 Frame = +2

Query: 386 VLHSVAVYEEALAALSAAFGRHSLHVATAQEDLAYAHYV 502
           +  SVA+Y+ AL    + FG  ++HVATA EDLAY+ YV
Sbjct: 304 ICQSVAIYQAALDIRQSVFGGKNIHVATAHEDLAYSSYV 342



 Score = 40.3 bits (90), Expect = 0.006
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +2

Query: 242 GFQQLLARLCKEFSSLFFVRCDYGAAYTWSMRALKLLTPHTPVKITIEVLHSVA 403
           G Q   A L  E  +L F +  Y  AY W + A+K +T   PVK+ ++VL   +
Sbjct: 200 GQQANKAALYGELCALLFAKSHYDEAYKWCIEAMKEITAGLPVKVVVDVLRQAS 253



 Score = 35.1 bits (77), Expect = 0.22
 Identities = 16/27 (59%), Positives = 20/27 (74%)
 Frame = +1

Query: 511 SSGRFYKAREHAERAIRIIQNLVPPDH 591
           SSG+F  A  HAERAI II +++P DH
Sbjct: 346 SSGKFDNALFHAERAIGIITHILPEDH 372


>AF017782-1|AAC83973.1|  585|Homo sapiens PAT1 protein.
          Length = 585

 Score = 45.2 bits (102), Expect = 2e-04
 Identities = 20/39 (51%), Positives = 27/39 (69%)
 Frame = +2

Query: 386 VLHSVAVYEEALAALSAAFGRHSLHVATAQEDLAYAHYV 502
           +  SVA+Y+ AL    + FG  ++HVATA EDLAY+ YV
Sbjct: 304 ICQSVAIYQAALDIRQSVFGGRNIHVATAHEDLAYSCYV 342



 Score = 40.3 bits (90), Expect = 0.006
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +2

Query: 242 GFQQLLARLCKEFSSLFFVRCDYGAAYTWSMRALKLLTPHTPVKITIEVLHSVA 403
           G Q   A L  E  +L F +  Y  AY W + A+K +T   PVK+ ++VL   +
Sbjct: 200 GQQANKAALYGELCALLFAKSHYDEAYKWCIEAMKEITAGLPVKVVVDVLRQAS 253



 Score = 31.1 bits (67), Expect = 3.6
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +1

Query: 511 SSGRFYKAREHAERAIRIIQNLVPPDH 591
           SSG+F  A  HAERAI II +++  DH
Sbjct: 346 SSGKFDNAVFHAERAIGIITHILREDH 372


>AB020634-1|BAA74850.2| 1608|Homo sapiens KIAA0827 protein protein.
          Length = 1608

 Score = 33.1 bits (72), Expect = 0.90
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +1

Query: 76  SYWASLKTSPSFPNAHSVWRKLAT*PRRLTATSRIHARWRGR 201
           S W+S  TSPSFP + + W+ L +  R+    SR   R+  R
Sbjct: 10  SPWSSPSTSPSFPRSSAQWKSLPSRRRQRQPPSRRRPRFGAR 51


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,642,541
Number of Sequences: 237096
Number of extensions: 1303130
Number of successful extensions: 3863
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3862
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7422585720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)