Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021240
         (659 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19350.1 68416.m02455 polyadenylate-binding protein-related /...    28   6.3  
At2g20770.1 68415.m02441 lanthionine synthetase C-like family pr...    27   8.4  

>At3g19350.1 68416.m02455 polyadenylate-binding protein-related /
           PABP-related similar to poly(A)-binding protein [Cucumis
           sativus] GI:7528270; contains Pfam profile PF00658:
           Poly-adenylate binding protein, unique domain
          Length = 103

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 352 EELERPHAPRVGGSVVAADEEQRAELLAQPR 260
           EELE   AP++ G ++  D+++   LL  P+
Sbjct: 44  EELEPQFAPKITGMILELDQDKVLHLLVTPK 74


>At2g20770.1 68415.m02441 lanthionine synthetase C-like family
           protein contains Pfam domain, PF05147: Lanthionine
           synthetase C-like protein
          Length = 405

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 66  LALKLLGITEDVAELPECSFSVAETCDVASQTDGDITNPCEMEG 197
           L  +   +T +  +L  C   + + CD AS + GD+T  C   G
Sbjct: 79  LLFRAYQVTGNANDLSLC-LEIVKACDTASASSGDVTFLCGRAG 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,052,172
Number of Sequences: 28952
Number of extensions: 182683
Number of successful extensions: 613
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)