Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021239
         (788 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    23   2.8  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.8  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   8.5  

>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 393 TVTFYCLIIFLVRAL 349
           TVTF CL +FL+  L
Sbjct: 287 TVTFLCLYLFLIITL 301


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 632 IIWTFHLMSAECI*DTVCHFII 567
           II+T HL+   CI    C FII
Sbjct: 154 IIFTVHLLFLLCIYHFFCAFII 175



 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -3

Query: 414 LFPF*CITVTFYCLIIFLVRALQQPIHMPTYWGLQIIT 301
           ++ F C+++TF   ++FL+ +    +H+  Y    I T
Sbjct: 56  IYYFYCVSITFNVHLLFLLCSGYFTVHLLFYCPFIIFT 93


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +2

Query: 71  TNKMPPSNPLPPKENALFKRILRCYEHKQYKNGLKFAKQILSN 199
           T   PP   L P ++A  KRI   +   Q    L+  ++  SN
Sbjct: 100 TPSPPPEERLTPSKDASSKRIXTAFTSTQL---LELEREFASN 139


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,451
Number of Sequences: 336
Number of extensions: 4524
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)