Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021239
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0712 - 24531654-24531874,24532438-24532538,24532621-245327... 133 2e-31
07_01_0475 + 3588145-3588204,3588728-3588799,3588881-3588996,359... 33 0.20
07_01_0101 - 752935-753223,753311-753408,753674-753764,753844-75... 30 2.4
02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143... 30 2.4
07_01_1174 + 11097044-11097070,11097950-11098096,11098381-110984... 29 3.2
08_01_0762 - 7319130-7319848,7320878-7321343 29 5.6
07_03_1474 - 26766078-26766536,26766634-26766885,26767201-267674... 28 7.4
06_01_0211 + 1604799-1605037,1605420-1605575,1605972-1606043,160... 28 9.7
04_03_0768 - 19396146-19396607,19397855-19398175,19398424-193995... 28 9.7
01_06_1726 - 39461451-39461791,39462127-39462183,39462527-394626... 28 9.7
>01_05_0712 -
24531654-24531874,24532438-24532538,24532621-24532716,
24532951-24533048,24533827-24533883,24534764-24534895,
24535042-24535155,24535227-24535359,24535448-24535678,
24535761-24535843,24536009-24536137,24536504-24536599,
24536719-24536773,24537316-24537386,24537472-24537525,
24537691-24537768,24537985-24538117,24539381-24539496,
24539580-24539651,24540113-24540218,24540657-24540772,
24541170-24541319,24541410-24541492,24541591-24541669,
24542645-24542695
Length = 884
Score = 133 bits (321), Expect = 2e-31
Identities = 64/109 (58%), Positives = 79/109 (72%)
Frame = +1
Query: 175 IRQTDIIQPKVRGAWRNLSHERSNIKFLGRKDEAYDYVRRGLRNDLKSPVCWHVYGLLQR 354
++ D I K LS + + + RK EAY+ VRRGL+NDLKS VCWHVYGLL R
Sbjct: 29 LKAADSILKKFPEHGETLSMKGLTLNCMDRKSEAYELVRRGLKNDLKSHVCWHVYGLLYR 88
Query: 355 SDKKYDEAIKCYRNALKWEKENIQILRDLSLLQIQMRDLEGYKDTRYQL 501
SD++Y EAIKCYRNAL+ + +NI+ILRDLSLLQ QMRDL G+ +TR QL
Sbjct: 89 SDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLSGFVETRQQL 137
Score = 76.6 bits (180), Expect = 2e-14
Identities = 41/96 (42%), Positives = 61/96 (63%), Gaps = 4/96 (4%)
Frame = +3
Query: 510 RPTQRASWIGFAMSYHLLGDYEMANSILDAFR-THQMKGPYD---YEHSELLLYQNMVLA 677
+P R +WIGFA+++HL + A +L+A+ T + P + YEHSE+LLY+ +
Sbjct: 141 KPNHRMNWIGFAVAHHLSSNSSKAIEVLEAYEGTLEDDYPPENERYEHSEMLLYKISLFE 200
Query: 678 ESGQYERALQHLQKFESQILDKLSVKETLGEYYLKL 785
E G +RAL+ +QK ES+I+DKLS KE + LKL
Sbjct: 201 ECGMLDRALEEMQKKESKIVDKLSFKEQMACILLKL 236
Score = 66.9 bits (156), Expect = 2e-11
Identities = 35/52 (67%), Positives = 38/52 (73%)
Frame = +2
Query: 98 LPPKENALFKRILRCYEHKQYKNGLKFAKQILSNPKFAEHGETLAMKGLTLN 253
LP KE LFK I++ YE KQYK GLK A IL KF EHGETL+MKGLTLN
Sbjct: 5 LPAKEANLFKVIVKSYETKQYKKGLKAADSILK--KFPEHGETLSMKGLTLN 54
>07_01_0475 +
3588145-3588204,3588728-3588799,3588881-3588996,
3590267-3590399,3590769-3590774
Length = 128
Score = 33.5 bits (73), Expect = 0.20
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +3
Query: 693 ERALQHLQKFESQILDKLSVKETLGEYYLKL 785
+RAL+ +QK +S+I+DKLS KE + LK+
Sbjct: 31 DRALEEMQKKDSKIVDKLSFKEQMAYVLLKV 61
>07_01_0101 -
752935-753223,753311-753408,753674-753764,753844-753882,
754019-754110,754535-754634,754742-754828,754949-755250,
756036-756242,756319-756405,756978-757058,757257-757365,
758037-758093,758188-758258,758414-758521,758874-758974,
759111-759177,759434-759535,759618-759662,759916-760511,
761956-762065,762165-762280
Length = 984
Score = 29.9 bits (64), Expect = 2.4
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = +1
Query: 214 AWRNLSHERSNIKFLGRKDEAYDYVRRGLRNDLKSPVCWHVYGLLQRSDKKYDEAIKCYR 393
+W +LS +I G ++ + V + L+ D+ +H+ G+L ++ AIK
Sbjct: 409 SWAHLSQLYLDI---GCPEKMLNNVEKVLQIDVSFGKAYHLRGILYHGMGRHRSAIKDLS 465
Query: 394 NALKWEKENIQIL 432
ALK E NI+ L
Sbjct: 466 VALKHESSNIECL 478
>02_04_0056 +
19313422-19313967,19314035-19314168,19314263-19314398,
19314870-19314923,19314995-19315135,19315220-19315546,
19315647-19315916,19316080-19316226,19316890-19317045,
19317223-19317290,19318210-19318309,19318696-19318985,
19319074-19319274,19319840-19319902,19320263-19320356,
19320964-19321035,19321979-19322077,19322254-19322376
Length = 1006
Score = 29.9 bits (64), Expect = 2.4
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +1
Query: 676 PNQDNMRELYSIYRSLKVKFWINY 747
P Q+N+ ++YS++R L+V+ W N+
Sbjct: 635 PIQNNLEDIYSLFRFLRVEPWRNW 658
>07_01_1174 +
11097044-11097070,11097950-11098096,11098381-11098424,
11098915-11098952,11099787-11099877,11100873-11100978,
11101062-11101132,11101221-11101290,11101547-11101609,
11101883-11102058,11102104-11102128,11102729-11102800,
11102903-11103004,11103089-11103163,11103749-11103871,
11104320-11104433,11106012-11106053,11106328-11106444,
11106983-11107039,11107424-11107441
Length = 525
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 672 LAESGQYERALQHLQKFESQILDKLSVKETLGEYYLKL 785
L E G+Y++A + L+K I DK+ LGE +L
Sbjct: 292 LVELGEYQKASEFLEKLVKVIPDKVEAYRLLGEVKFEL 329
>08_01_0762 - 7319130-7319848,7320878-7321343
Length = 394
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 486 YQISAFHARPTQRASWIGFAMSYHLLGDYEMANSILDAF 602
Y + A TQR +W GF HLL +E+ N +D+F
Sbjct: 338 YNNTGAGANVTQRVNWHGF----HLLAPHEVRNFTVDSF 372
>07_03_1474 -
26766078-26766536,26766634-26766885,26767201-26767401,
26767986-26768156,26768249-26768433,26768526-26768851,
26769430-26770631
Length = 931
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 337 YGLLQRSDKKYDEAIKCYRNALKWEKENIQILRDLSLLQI 456
YGL +R+ YDEA++ N+ K I I R L +
Sbjct: 648 YGLAKRAMNVYDEAVRAVPNSEKMSMYEIYIARAAELFGV 687
>06_01_0211 +
1604799-1605037,1605420-1605575,1605972-1606043,
1606325-1606396,1606608-1606679,1606777-1606848,
1606936-1607007,1607092-1607160,1607278-1607349,
1607630-1607701,1607786-1607857,1607940-1608011,
1608100-1608171,1608286-1608357,1608449-1608520,
1608633-1608704,1608801-1608872,1608962-1609033,
1609120-1609191,1609283-1609353,1609439-1609570,
1609676-1610014,1610097-1610467,1610599-1610928,
1611115-1611150
Length = 964
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 421 YSPFPILVHYGNILLPHHISCQSAATAHTHANILGTS 311
+S FP+ GN LL H+ CQ ++ H+H + S
Sbjct: 532 FSKFPMESFLGNPLL--HVYCQDSSCGHSHGQRVNIS 566
>04_03_0768 -
19396146-19396607,19397855-19398175,19398424-19399569,
19400073-19400855,19402114-19402149
Length = 915
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 654 LYQNMVLAESGQYERALQHLQKFESQILD 740
LY N + ES ++E L H QKF Q++D
Sbjct: 473 LYVNGIPLESNRWEALLSHFQKF-GQVID 500
>01_06_1726 -
39461451-39461791,39462127-39462183,39462527-39462674,
39462775-39463010,39463025-39463059,39463364-39463497
Length = 316
Score = 27.9 bits (59), Expect = 9.7
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Frame = +1
Query: 241 SNIKFLGRKDEAYDYVRRGLRNDLK-----SPVCWHVYGLLQRSDKKYDEAIKCYRNALK 405
SN+ L R+ Y+ RR L L+ +P ++ GL+ ++ +Y+EAI C+ +L+
Sbjct: 236 SNLGILYRQHGRYELARRMLLRSLELCPGHAPANNNL-GLVSIAEGRYEEAISCFEKSLQ 294
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,667,653
Number of Sequences: 37544
Number of extensions: 441921
Number of successful extensions: 1110
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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